|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
275-941 |
4.07e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 4.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 275 AEDDVEKLRGEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRREcegLRGTKKTIHDANGSGKR 354
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ---KQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 355 LSDGEDPWSQ--------VEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEEtvEDHQ 426
Cdd:TIGR02168 321 LEAQLEELESkldelaeeLAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ--IASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 427 EAQYEHALSNVHTAGHKID--MSETSSYQGKEDELMLDALVKKSDGI---------ASSELEEKIVELSDEIELYKRDRE 495
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRErlQQEIEELLKKLEEAELKELQAELEELeeeleelqeELERLEEALEELREELEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 496 DLEMQMEQLALDYEILK--QENHDISSRLEQTQLREQLRMqyecSAHLSIISDLEANVENLENELQAQskrLEADIAEVL 573
Cdd:TIGR02168 479 AAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSGL----SGILGVLSELISVDEGYEAAIEAA---LGGRLQAVV 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 574 aakVEQEKRAIKAEESLRKARWNNATTAE-RLQEEFKSLSSQVSSAFSANERLLVQARKEAAELQLQKSqLEELVQKAH- 651
Cdd:TIGR02168 552 ---VENLNAAKKAIAFLKQNELGRVTFLPlDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA-LSYLLGGVLv 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 652 -EDIASVQEQHRmKIQQLLTLVD-------------FKSNETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTR 717
Cdd:TIGR02168 628 vDDLDNALELAK-KLRPGYRIVTldgdlvrpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 718 IAKLSDERDNLLEKNEKKDMELAANGEKDMVLQDK----TAVIALLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGK 793
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEveqlEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 794 LQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVLKLRRALESREgvKENGVTSDAKDNQHSNSKRIKHDTGStgssyapp 873
Cdd:TIGR02168 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE--RRIAATERRLEDLEEQIEELSEDIES-------- 856
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 960479920 874 stdrhdanddcNEHSMRGAGAHADQSTKELDSLKEMNKAMQEELMELHERYSEISLKFAEVEGERQQL 941
Cdd:TIGR02168 857 -----------LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
475-838 |
2.09e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 2.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDlemqmeqlALDYEILKQENHDISSRLeqtQLREQLRMQYECSAHLSIISDLEANVENL 554
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREK--------AERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 555 ENELQAQSKRLEAdiAEVLAAKVEQEKRAIKAEESLRkarwnnattaerLQEEFKSLSSQVSSAFSANERLLVQARKEAA 634
Cdd:TIGR02169 257 TEEISELEKRLEE--IEQLLEELNKKIKDLGEEEQLR------------VKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 635 ELQLQKSQLEELvQKAHEDIASVQEQHRMKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRcdeaKLNALSEEIDKL 714
Cdd:TIGR02169 323 RLAKLEAEIDKL-LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD----ELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 715 KTRIAKLSDERDNLLEKNEKKDMELAangEKDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLKhsknekdEVIGKL 794
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELA---DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA-------ADLSKY 467
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 960479920 795 QIDIGSLKLQYDNVKNLLSTKESEksnlASQVLKLRRALESREG 838
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRE----LAEAEAQARASEERVR 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
475-741 |
2.08e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLREQLRMQyecsAHLSIISDLEANVENL 554
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA----ELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 555 EnELQAQSKRLEADIAEVL-------AAKVEQEKRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFSANERLLv 627
Cdd:COG1196 312 R-ELEERLEELEEELAELEeeleeleEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 628 QARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLtlvdfksnETERLVMELKSKTDEFQNQKRCDEAKLNAL 707
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA--------ELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270
....*....|....*....|....*....|....
gi 960479920 708 SEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAA 741
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
380-730 |
2.41e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 380 ADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQEaqyehalsnVHTAGHKIDMSETSSYQGKEDEL 459
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ---------ISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 460 MLDALVKKSDGIASsELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQlREQLRMQYECSA 539
Cdd:TIGR02168 751 QLSKELTELEAEIE-ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-EEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 540 HLSIISDLEANVENLENELQAQSKRLEADIAEVLAAKVEQEKrAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAf 619
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-LESELEALLNERASLEEALALLRSELEELSEELREL- 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 620 sanERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQ-KR 698
Cdd:TIGR02168 907 ---ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKiKE 983
|
330 340 350
....*....|....*....|....*....|..
gi 960479920 699 CDEAKLNALsEEIDKLKTRIAKLSDERDNLLE 730
Cdd:TIGR02168 984 LGPVNLAAI-EEYEELKERYDFLTAQKEDLTE 1014
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
581-837 |
9.79e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 9.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 581 KRAIKAEESLRKARWNnattAERLQEEFKSLSSQVSS----AFSANERLLVQARKEAAELQLQKSQLEELVQKAHE---D 653
Cdd:TIGR02168 172 ERRKETERKLERTREN----LDRLEDILNELERQLKSlerqAEKAERYKELKAELRELELALLVLRLEELREELEElqeE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 654 IASVQEQHRmKIQQLLTLVDFKSNETERLVMELKSKTDEFQnqkrcdeAKLNALSEEIDKLKTRIAKLSDERDNLLEKNE 733
Cdd:TIGR02168 248 LKEAEEELE-ELTAELQELEEKLEELRLEVSELEEEIEELQ-------KELYALANEISRLEQQKQILRERLANLERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 734 KKDMELAANGEKDMVLQDKTA----VIALLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQIDIGSLKLQYDNVK 809
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAeleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
250 260
....*....|....*....|....*...
gi 960479920 810 NLLSTKESEKSNLASQVLKLRRALESRE 837
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEIEELL 427
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
276-836 |
1.21e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 276 EDDVEKLRGEIgtlTRKLDVSDMELQTLRKQIVKEsrrgHDLskEMSSLREERDALRRECEGLRGTKKTIHDA--NGSGK 353
Cdd:pfam15921 244 EDQLEALKSES---QNKIELLLQQHQDRIEQLISE----HEV--EITGLTEKASSARSQANSIQSQLEIIQEQarNQNSM 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 354 RLSDGEDPWSQVEELKQELGHEKNLNADlrlqlqKMQESNSELLLAVKDLDEVLEQKNReisILQEETVEDHQeaqYEHA 433
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYED------KIEELEKQLVLANSELTEARTERDQ---FSQESGNLDDQ---LQKL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 434 LSNVHTAGHKIdmsetsSYQGKEDELMLDALVKKSDGI--ASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEIL 511
Cdd:pfam15921 383 LADLHKREKEL------SLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGK 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 512 KQENHDISSRLEQTQ-LREQLR-MQYECSAHLSIISDLEANVENLENELQAQSKRLEADIAEV--LAAKVE---QEKRAI 584
Cdd:pfam15921 457 NESLEKVSSLTAQLEsTKEMLRkVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEItkLRSRVDlklQELQHL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 585 KAE-ESLRKARwnNATTAERLQEEFKSLSSQVSSAFSANERLLV-QARKEAAELQLQKSQLEELVQKAH---EDIASVQE 659
Cdd:pfam15921 537 KNEgDHLRNVQ--TECEALKLQMAEKDKVIEILRQQIENMTQLVgQHGRTAGAMQVEKAQLEKEINDRRlelQEFKILKD 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 660 QHRMKIQQL--------LTLVDFKSNETERL--VMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDERD--- 726
Cdd:pfam15921 615 KKDAKIRELearvsdleLEKVKLVNAGSERLraVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEttt 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 727 NLLE---KNEKKDMELAANGEKDMVLQDKTAV-IAL-LNKEVTLLKDQVQTYLEELHTLkhsknekDEVIGKLQIDIGSL 801
Cdd:pfam15921 695 NKLKmqlKSAQSELEQTRNTLKSMEGSDGHAMkVAMgMQKQITAKRGQIDALQSKIQFL-------EEAMTNANKEKHFL 767
|
570 580 590
....*....|....*....|....*....|....*
gi 960479920 802 KLQYDNVKNLLSTKESEKSNLASQvLKLRRALESR 836
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGE-LEVLRSQERR 801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
275-802 |
4.63e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 4.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 275 AEDDVEKLRGEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDAL----RRECEGLRGTKKTIHDANG 350
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdiARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 351 SGKRLSDGEDpwSQVEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQEAQY 430
Cdd:COG1196 324 ELAELEEELE--ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 431 EHALSNVHTAGHKIDMSETSSYQGKEDELMLDALVKKSDGIASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEI 510
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 511 LKQENHDISSRLEQTQLREQLRMQYECSAHLSIISDLEANVENLENELQAQSKRLEADIAEVLAAK-----VEQEKRAIK 585
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlqnivVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 586 AEESLRKARWNNATT-AERLQEEFKSLSSQVSSAFSANERLLVQARKEAAELQLQKSQLEELVQkahediASVQEQHRMK 664
Cdd:COG1196 562 AIEYLKAAKAGRATFlPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR------TLVAARLEAA 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 665 IQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAANGE 744
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 960479920 745 KDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQIDIGSLK 802
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
475-728 |
7.71e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 7.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLREQlrmqyecsAHLSIISDLEANVENL 554
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY--------ALANEISRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 555 ENE---LQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARwNNATTAERLQEEFKSLSSQVSSAFSANERLLVQARK 631
Cdd:TIGR02168 308 RERlanLERQLEELEAQLEELESKLDELAEELAELEEKLEELK-EELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 632 EAAELQLQ-----------KSQLEELvQKAHEDIASVQEQHRMKIQQL-LTLVDFKSNETERLVMELKSKTDEFQNQKRC 699
Cdd:TIGR02168 387 KVAQLELQiaslnneierlEARLERL-EDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260
....*....|....*....|....*....
gi 960479920 700 DEAKLNALSEEIDKLKTRIAKLSDERDNL 728
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSL 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
265-608 |
2.85e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 265 SNSGETGLGGAEDDVEKLRGEIGTLTRKLDVSDMELQTLRKQ-------IVKESRRGHDLSKEMSSLREERDALRRECEG 337
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEleeleeeLEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 338 LRGTKKTIHDANGSGKRLSDGEDpwSQVEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISIL 417
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELE--ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 418 QeETVEDHQEAQYEHALSNVHTAGHKIDMSET--------SSYQGKEDELmLDALVKKSDgiASSELEEKIVELSDEIEL 489
Cdd:TIGR02168 823 R-ERLESLERRIAATERRLEDLEEQIEELSEDieslaaeiEELEELIEEL-ESELEALLN--ERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 490 YKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLR-----EQLRMQYECSahLSIISDLEANVENLENELQAQSKR 564
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnlqERLSEEYSLT--LEEAEALENKIEDDEEEARRRLKR 976
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 960479920 565 LEADIAEV----LAA-----KVEQEKRAIKAE-ESLRKARWN--------NATTAERLQEEF 608
Cdd:TIGR02168 977 LENKIKELgpvnLAAieeyeELKERYDFLTAQkEDLTEAKETleeaieeiDREARERFKDTF 1038
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
474-828 |
3.41e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 474 SELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLreqlrmqyECSAHLSIISDLEANVEN 553
Cdd:TIGR04523 221 SELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK--------ELEQNNKKIKELEKQLNQ 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 554 LENELQAQSKRLEADIAEVLA---AKVEQEKRAIKAE---------------ESLRKARWNNATTAERLQEEFKSLSSQV 615
Cdd:TIGR04523 293 LKSEISDLNNQKEQDWNKELKselKNQEKKLEEIQNQisqnnkiisqlneqiSQLKKELTNSESENSEKQRELEEKQNEI 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 616 SSAFSANERLLVQARK---EAAELQLQKSQLEELVQKAHEDIASVQEQHRMK---IQQLLTLVDFKSNETERL------- 682
Cdd:TIGR04523 373 EKLKKENQSYKQEIKNlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLekeIERLKETIIKNNSEIKDLtnqdsvk 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 683 ---VMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDERDNLLEKN---EKKDMELAANGEKDMVLQDK-TAV 755
Cdd:TIGR04523 453 eliIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVKDLTKKISSLKEKIEKlESE 532
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 756 IALLNKEVTLLKDQVQTYLEEL--HTLKHSKNEKDEVIGKLQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVLK 828
Cdd:TIGR04523 533 KKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE 607
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
276-940 |
9.17e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 9.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 276 EDDVEKLRGEIGTLTRKLDVSDmELQTLRKQIVKESRRghDLSKEMSSLREERDAL----RREC---EGLRGT-KKTIHD 347
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESN-ELHEKQKFYLRQSVI--DLQTKLQEMQMERDAMadirRRESqsqEDLRNQlQNTVHE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 348 ANGSGKRLSDG-EDPWSQVEEL-KQELGHEKNLNaDLRLQL--------QKMQESNSELLLAVKDL----DEVLEQKNRE 413
Cdd:pfam15921 154 LEAAKCLKEDMlEDSNTQIEQLrKMMLSHEGVLQ-EIRSILvdfeeasgKKIYEHDSMSTMHFRSLgsaiSKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 414 ISILQEET--VEDHQEAQYEHALSNVHT--AGHKIDMSETSSyqgkEDELMLDALVKKSDGIAS------SELEEKIVEL 483
Cdd:pfam15921 233 ISYLKGRIfpVEDQLEALKSESQNKIELllQQHQDRIEQLIS----EHEVEITGLTEKASSARSqansiqSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 484 SDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQ---------TQLREQLRMQYECSAHLS-IISDLEANVEN 553
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKqlvlanselTEARTERDQFSQESGNLDdQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 554 LENEL---QAQSKRL----------------EADIAEVLAAKVEQEKRAIKAEESLRKARWNNATTAErlQEEFKSLSSQ 614
Cdd:pfam15921 389 REKELsleKEQNKRLwdrdtgnsitidhlrrELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGK--NESLEKVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 615 VSSAFSANERLlvqaRKEAAELQLQKSQLEELVQKAHEDIASVQEQHRM------KIQQLLTLVDFKSNETErlvmELKS 688
Cdd:pfam15921 467 TAQLESTKEML----RKVVEELTAKKMTLESSERTVSDLTASLQEKERAieatnaEITKLRSRVDLKLQELQ----HLKN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 689 KTDEFQN-QKRCDEAKLNALSEE--IDKLKTRIAKLSD--------------ERDNLLEKNEKKDMELaangEKDMVLQD 751
Cdd:pfam15921 539 EGDHLRNvQTECEALKLQMAEKDkvIEILRQQIENMTQlvgqhgrtagamqvEKAQLEKEINDRRLEL----QEFKILKD 614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 752 KT-AVIALLNKEVTLLKDQ----VQTYLEELHTLKHSKNEKDEVIGKLQI---DIGSLKLQYDNVKNLLSTKeSEKSNLA 823
Cdd:pfam15921 615 KKdAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQERDQLLNEVKTsrnELNSLSEDYEVLKRNFRNK-SEEMETT 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 824 SQVLKL------------RRALESREGVKENGVTSDAKDNQHSNSKRIKHDTGSTGSSY-----APPSTDRHDANDDCNE 886
Cdd:pfam15921 694 TNKLKMqlksaqseleqtRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFleeamTNANKEKHFLKEEKNK 773
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 960479920 887 HS--MRGAGAHADQSTKELDSLKEMNKAMQEELMELHERYSEISLKFAEVEG--ERQQ 940
Cdd:pfam15921 774 LSqeLSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDiiQRQE 831
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
526-838 |
1.31e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 526 QLREQLRmQYECSAHLSIISDLEANVENLENELQAQSKRLEADIAEV--LAAKVEQEKRAIKAEEslrkarwnnaTTAER 603
Cdd:COG1196 217 ELKEELK-ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELaeLEAELEELRLELEELE----------LELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 604 LQEEFKSLSSQVSsafsanerllvQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLVDFKSNETERLV 683
Cdd:COG1196 286 AQAEEYELLAELA-----------RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 684 MELKSKTDEFQNQKRcDEAKLNALSEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAANGEKDmvLQDKTAVIALLNKEV 763
Cdd:COG1196 355 EAEAELAEAEEALLE-AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL--ERLEEELEELEEALA 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 764 TLLKDQVQTyLEELHTLKHSKNEKDEVIGKLQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVLKLRRALESREG 838
Cdd:COG1196 432 ELEEEEEEE-EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
284-822 |
4.31e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 4.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 284 GEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGTKKTIHDANGSGKRLSdgedpwS 363
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLE------S 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 364 QVEELKQElghEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQEAQyehALSNVHTAGHK 443
Cdd:TIGR04523 219 QISELKKQ---NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK---KIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 444 IDMSETSSYQGKEDELM------LDALVKKSDGIAS--SELEEKIVELSDEIELYKRDREDLEMqmEQLALDYEI----- 510
Cdd:TIGR04523 293 LKSEISDLNNQKEQDWNkelkseLKNQEKKLEEIQNqiSQNNKIISQLNEQISQLKKELTNSES--ENSEKQRELeekqn 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 511 -LKQENHDISSRLEQTQlreQLRMQyecsahlsiISDLEANVENLENE----------LQAQSKRLEADIAEVLAAKVEQ 579
Cdd:TIGR04523 371 eIEKLKKENQSYKQEIK---NLESQ---------INDLESKIQNQEKLnqqkdeqikkLQQEKELLEKEIERLKETIIKN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 580 E---KRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFS---ANERLLVQARKEAAELQLQKSQLEELVQKAHED 653
Cdd:TIGR04523 439 NseiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 654 IASVQEqhrmKIQQLltlvdfkSNETERLVMELKSKTDEFQNQKrcDEAKLNALSEEIDKLKTRIAKLSDERDNLLEKNE 733
Cdd:TIGR04523 519 ISSLKE----KIEKL-------ESEKKEKESKISDLEDELNKDD--FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 734 kkdmelaangEKDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQIDIGSLKLQYDNVKNLLS 813
Cdd:TIGR04523 586 ----------EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
....*....
gi 960479920 814 TKESEKSNL 822
Cdd:TIGR04523 656 EIRNKWPEI 664
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
274-723 |
5.10e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 5.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 274 GAEDDVEKLRGEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGtkktihDANGSGK 353
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ------EEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 354 RLSDGEDpwsQVEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDL-----DEVLEQKNREISILQEETVEdhQEA 428
Cdd:TIGR02169 738 RLEELEE---DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSR--IEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 429 QYEHalsnvhtaghkIDMSETSSYQGKE--DELMLDALVKKSDgiasseLEEKIVELSDEIELYKRDREDLEMQMEQLal 506
Cdd:TIGR02169 813 RLRE-----------IEQKLNRLTLEKEylEKEIQELQEQRID------LKEQIKSIEKEIENLNGKKEELEEELEEL-- 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 507 dyeilkqenhdissRLEQTQLREQLrmqyecsahlsiiSDLEANVENLENELQAQSKRLEAdiaevLAAKVEQEKRAIKA 586
Cdd:TIGR02169 874 --------------EAALRDLESRL-------------GDLKKERDELEAQLRELERKIEE-----LEAQIEKKRKRLSE 921
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 587 EEslrkarwnnaTTAERLQEEFKSLSSQVSSAFSANERLL----VQARKEAAELQLQKsqLEELVQKAHEDIASVQEQHR 662
Cdd:TIGR02169 922 LK----------AKLEALEEELSEIEDPKGEDEEIPEEELsledVQAELQRVEEEIRA--LEPVNMLAIQEYEEVLKRLD 989
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 960479920 663 MKIQQLLTLvdfksnETERlvMELKSKTDEFQNQKRcdEAKLNALSEEIDKLKTRIAKLSD 723
Cdd:TIGR02169 990 ELKEKRAKL------EEER--KAILERIEEYEKKKR--EVFMEAFEAINENFNEIFAELSG 1040
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
471-732 |
7.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 7.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 471 IASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSrlEQTQLREQlrmqyecsahlsiISDLEAN 550
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS--ELKELEAR-------------IEELEED 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 551 VENLENELQAqskrLEADIAEVLAAKVEQEKRAIKAEESLRKARwnnattAERLQEEFKSLSSQVSSAFSANERLLVQAR 630
Cdd:TIGR02169 774 LHKLEEALND----LEARLSHSRIPEIQAELSKLEEEVSRIEAR------LREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 631 keaaELQLQKSQLE---ELVQKAHEDIASVQEQHRMKIQQLltlvdfksneTERLVmELKSKTDEFQNQKRCDEAKLNAL 707
Cdd:TIGR02169 844 ----DLKEQIKSIEkeiENLNGKKEELEEELEELEAALRDL----------ESRLG-DLKKERDELEAQLRELERKIEEL 908
|
250 260
....*....|....*....|....*
gi 960479920 708 SEEIDKLKTRIAKLSDERDNLLEKN 732
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| NT-C2 |
pfam10358 |
N-terminal C2 in EEIG1 and EHBP1 proteins; This version of the C2 domain was initally ... |
2-105 |
1.06e-07 |
|
N-terminal C2 in EEIG1 and EHBP1 proteins; This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light.
Pssm-ID: 463058 Cd Length: 143 Bit Score: 51.94 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 2 MVVVTPQDVGRPTARSERAEVAGGACRWAAPIFEATKL-PNPGKAAAGDKIYKFLVY-ETGSSKAALLGEATANLAEYA- 78
Cdd:pfam10358 27 FVKWRRGDKKGSSGTTEKALVNNGRAIFNEEFSIPVTLfLDKKGGKYEEKLLEFSVYkVTKKGKKKVLGKASIDLAEYAn 106
|
90 100
....*....|....*....|....*..
gi 960479920 79 EAFKPSAVTLPLKGSPAPGALLHVTIQ 105
Cdd:pfam10358 107 LKKKPTTVRFLLKKSSKKNATLSLSIQ 133
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
486-952 |
1.38e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 486 EIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLREQLRmQYECSAHLSI--ISDLEANVENLENELQAQSK 563
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-ELENELNLLEkeKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 564 RLEadiaeVLAAKVEQEKRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFSANERLLVQARKEAAelQLQKSQL 643
Cdd:TIGR04523 202 LLS-----NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK--QLSEKQK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 644 EelVQKAHEDIASVQEQhrmkIQQLLT-LVDFKSNETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLS 722
Cdd:TIGR04523 275 E--LEQNNKKIKELEKQ----LNQLKSeISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 723 DERDNLLEKNEKKDMELAangEKdmvlqdktaviallNKEVTLLKDQVQTYLEELHTLKHSKNE-------KDEVIGKLQ 795
Cdd:TIGR04523 349 KELTNSESENSEKQRELE---EK--------------QNEIEKLKKENQSYKQEIKNLESQINDleskiqnQEKLNQQKD 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 796 IDIGSLKLQYD----NVKNLLSTKESEKSNLASqvlklrraLESREGVKENGVTSdAKDNQHSNSKRIKHDTGSTGSsya 871
Cdd:TIGR04523 412 EQIKKLQQEKEllekEIERLKETIIKNNSEIKD--------LTNQDSVKELIIKN-LDNTRESLETQLKVLSRSINK--- 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 872 ppstdrhdanddcNEHSMRGAGAHADQSTKELDSLKEMNKAMQEELMELHERYSEISLKFAEVEGERQQLVMTVRTLKNS 951
Cdd:TIGR04523 480 -------------IKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
.
gi 960479920 952 L 952
Cdd:TIGR04523 547 L 547
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
291-594 |
3.02e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 291 RKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRgtkKTIHDANGSGKRLSdgedpwSQVEELKQ 370
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE---LELEEAQAEEYELL------AELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 371 ELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEEtvEDHQEAQYEHALSNVHTAGHKIDMSETS 450
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE--LEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 451 SYQGKEDELMLDAlvkksdgiASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQEnHDISSRLEQTQLREQ 530
Cdd:COG1196 381 LEELAEELLEALR--------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE-EEEEEEALEEAAEEE 451
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 960479920 531 LRMQYECSAHLSIISDLEANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKAR 594
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
299-811 |
5.41e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 5.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 299 ELQTLRKQIvkesrrgHDLSKEMSSLREERDALRRECEGLRGTKKTIHDANGSGKRLSDGEDPWSQVEELKQElgheknl 378
Cdd:PRK02224 252 ELETLEAEI-------EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARRE------- 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 379 naDLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQEAqyEHALSNVHTAGHKIDMSETssyqgkede 458
Cdd:PRK02224 318 --ELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA--AELESELEEAREAVEDRRE--------- 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 459 lmldalvkksdgiASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLR----EQLRMQ 534
Cdd:PRK02224 385 -------------EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERveeaEALLEA 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 535 YEC---------SAHLSIISDLEANVENLENELQAqskrLEADIAEVlAAKVEQEKRAIKAEESLRKARWNNATTAERLQ 605
Cdd:PRK02224 452 GKCpecgqpvegSPHVETIEEDRERVEELEAELED----LEEEVEEV-EERLERAEDLVEAEDRIERLEERREDLEELIA 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 606 EEFKSLSSQvssafsanERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEqhrmkiqqlltlvdfKSNETERLVME 685
Cdd:PRK02224 527 ERRETIEEK--------RERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE---------------EVAELNSKLAE 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 686 LKSKTDEFqnqkrcdeAKLNALSEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAANGEKDMVLQDK---TAVIALLNKe 762
Cdd:PRK02224 584 LKERIESL--------ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdeARIEEARED- 654
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 960479920 763 vtllKDQVQTYLEEL-HTLKHSKNEKDEvigkLQIDIGSLKLQYDNVKNL 811
Cdd:PRK02224 655 ----KERAEEYLEQVeEKLDELREERDD----LQAEIGAVENELEELEEL 696
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
474-848 |
6.91e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 6.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 474 SELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENhdissRLEQTQLREQLRMQYECSAHLSIISDLEANVEN 553
Cdd:pfam02463 156 LEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKL-----QELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 554 LENELQAQSKRLEADIAEvLAAKVEQEKRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFSANERLLVQARKEA 633
Cdd:pfam02463 231 YLKLNEERIDLLQELLRD-EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 634 AELQLQKSQLEELVQKAHEDIASVQEQhRMKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDK 713
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEE-IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSS 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 714 lKTRIAKLSDERDNLLEKNEKKDMELAANgeKDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELhtlkhsKNEKDEVIGK 793
Cdd:pfam02463 389 -AAKLKEEELELKSEEEKEAQLLLELARQ--LEDLLKEEKKEELEILEEEEESIELKQGKLTEE------KEELEKQELK 459
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 794 LQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVLKLRRALESREGVKENGVTSDA 848
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLA 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
272-721 |
9.75e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 9.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 272 LGGAEDDVEKLRGEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRgtKKTIHDANGS 351
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA--AQLEELEEAE 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 352 GKRLSDGEDPWSQVEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQEAQye 431
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA-- 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 432 hALSNVHTAGHKIDMSETSSYQGKEDELMLDALVKKSDGIASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEIL 511
Cdd:COG1196 488 -EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 512 KQENH---------DISSRLEQTQLREQLRMQYECSAHLSIISDLEANVENLENELQAQSkRLEADIAEVLAAKVEQEKR 582
Cdd:COG1196 567 KAAKAgratflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT-LVAARLEAALRRAVTLAGR 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 583 AIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFSANERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHR 662
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 960479920 663 MKIQQLLTLVDFKSNETERLVMELKSKTDEFQnqkrcDEAKLNALSEEIDKLKTRIAKL 721
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELP-----EPPDLEELERELERLEREIEAL 779
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
386-722 |
1.11e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 386 LQKMQESNSELLLAVKDLdEVLEQKNREISILQEETVEDHQEAQYEHALSNVHTAGHKIDMSE----TSSYQGKEDELM- 460
Cdd:TIGR00618 461 LQESAQSLKEREQQLQTK-EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNpgplTRRMQRGEQTYAq 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 461 LDALVKKSDGIASSELEeKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLE-----QTQLREQLRMQY 535
Cdd:TIGR00618 540 LETSEEDVYHQLTSERK-QRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEklseaEDMLACEQHALL 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 536 ECSAHLSIISDLEANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARWNNATTAE------------- 602
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMqsekeqltywkem 698
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 603 -------------------RLQEEFKSLSSQVSSAFSANERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRM 663
Cdd:TIGR00618 699 laqcqtllrelethieeydREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGA 778
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 960479920 664 KIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRCDEAKLNA----LSEEIDKLKTRIAKLS 722
Cdd:TIGR00618 779 ELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLqcetLVQEEEQFLSRLEEKS 841
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
601-941 |
1.36e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 601 AERLQEEFKSLSSQVSSAFSANERLlvqaRKEAAELQLQKSQLEELVQKAHEDIASVQEQHRmKIQQLLTLVDFKSNETE 680
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRI----ENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-KLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 681 RLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKtriAKLSDER-DNLLEKNEKKDMELAangEKDMVLQDKTAVIALL 759
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLE---ARLSHSRiPEIQAELSKLEEEVS---RIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 760 NKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVLKLRRAL-ESREG 838
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLrELERK 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 839 VKENGVTSDAKDNQHSNSKRIKHDTGSTGSSYAPPStdRHDANDDCNEHSMRGAGAHADQSTKELDSLKEMNKAMQEELM 918
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK--GEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYE 982
|
330 340
....*....|....*....|...
gi 960479920 919 ELHERYSEISLKFAEVEGERQQL 941
Cdd:TIGR02169 983 EVLKRLDELKEKRAKLEEERKAI 1005
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
474-661 |
1.48e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 474 SELEEKIVELSDEIEL----------YKRDREDLEMQMEQLA-LDYEILKQENHDISSRLEQtqLREQL-RMQYECSAHL 541
Cdd:COG4913 238 ERAHEALEDAREQIELlepirelaerYAAARERLAELEYLRAaLRLWFAQRRLELLEAELEE--LRAELaRLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 542 SIISDLEANVENLENELQAQS----KRLEADIAEVLAAKVEQEKRAIKAEESLRKARWNNATTAerlqEEFKSLSSQVSS 617
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGgdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASA----EEFAALRAEAAA 391
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 960479920 618 AFSANERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQH 661
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
276-740 |
1.54e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 276 EDDVEKLRGEIGTLT-RKLDVSDMELQTLRKQIVKESRRGHDLSKemssLREERDALRRECEGLRGTKKTIHDANGSGKR 354
Cdd:COG4717 48 LERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAE----LQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 355 LSDGEDPWSQVEELKQELGHEKNLNADLR---LQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQEaQYE 431
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEerlEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE-ELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 432 HALSNVHTAGHKIDMSETSSYQGKEDelmLDALvkkSDGIASSELEEKIVE--------------LSDEIELYKRDREDL 497
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEE---LEQL---ENELEAAALEERLKEarlllliaaallalLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 498 EMQM---------------EQLALDYEILKQENHDISSRLEQTQLREQL-RMQYECSAHLSIISDLEANVEnlenELQAQ 561
Cdd:COG4717 277 GVLFlvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLaALGLPPDLSPEELLELLDRIE----ELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 562 SKRLEADIAEVLAAKVEQEKRAI------KAEESLRkARWNNATTAERLQEEFKSLSSQVSSAFSANERLLVQARKEAAE 635
Cdd:COG4717 353 LREAEELEEELQLEELEQEIAALlaeagvEDEEELR-AALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELE 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 636 LQLQksQLEELVQKAHEDIASVQEQHRMKIQQLLTLvdfksnETERLVMELKsktDEFQNQKrcdeAKLNALSEEIDKLK 715
Cdd:COG4717 432 EELE--ELEEELEELEEELEELREELAELEAELEQL------EEDGELAELL---QELEELK----AELRELAEEWAALK 496
|
490 500
....*....|....*....|....*
gi 960479920 716 TRIAKLSDERDNLLEKNEKKDMELA 740
Cdd:COG4717 497 LALELLEEAREEYREERLPPVLERA 521
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
278-795 |
1.56e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 278 DVEKLRGEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREErdalRRECEGLRGTKKTIHDANGSGKRLSD 357
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK----VKELKELKEKAEEYIKLSEFYEEYLD 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 358 GEdpwsqvEELKQELGHEKNLNADLRLQLQKMQESNSELllavKDLDEVLEQKNREISILqEETVEDHQEAqyehalsnv 437
Cdd:PRK03918 308 EL------REIEKRLSRLEEEINGIEERIKELEEKEERL----EELKKKLKELEKRLEEL-EERHELYEEA--------- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 438 htaghKIDMSETSSYQGKEDELMLDALVKKSDGI--ASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQEN 515
Cdd:PRK03918 368 -----KAKKEELERLKKRLTGLTPEKLEKELEELekAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 516 HDISSRLEQTQLREQLRMQYECSAHL----SIISDLEANVENLENELQAQSKRL-EADIAEVLAAkVEQEKRAIKAEESL 590
Cdd:PRK03918 443 RELTEEHRKELLEEYTAELKRIEKELkeieEKERKLRKELRELEKVLKKESELIkLKELAEQLKE-LEEKLKKYNLEELE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 591 RKARwnnatTAERLQEEFKSLSSQVSSAFSANERL-LVQARKEAAELQLQ--KSQLEELVQKAHEDIASVQEQHRMKIQQ 667
Cdd:PRK03918 522 KKAE-----EYEKLKEKLIKLKGEIKSLKKELEKLeELKKKLAELEKKLDelEEELAELLKELEELGFESVEELEERLKE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 668 L-------LTLVDFKSnETERLVMELKSKTDEfqnqkrcdeakLNALSEEIDKLKTRIAKLSDERDNLLEKNEKKDMEla 740
Cdd:PRK03918 597 LepfyneyLELKDAEK-ELEREEKELKKLEEE-----------LDKAFEELAETEKRLEELRKELEELEKKYSEEEYE-- 662
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 741 angEKDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQ 795
Cdd:PRK03918 663 ---ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
477-809 |
2.17e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 477 EEKIVELSDEIELYKRDREDLEMQMeQLALDYEILKQENHDISSRlEQTQLREQLRMQYECS-----AHLSIISDLEANV 551
Cdd:pfam05483 281 DENLKELIEKKDHLTKELEDIKMSL-QRSMSTQKALEEDLQIATK-TICQLTEEKEAQMEELnkakaAHSFVVTEFEATT 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 552 ENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEEsLRKARWNNATTAERLQ-------------EEFKSLSSQVSSA 618
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKkilaedeklldekKQFEKIAEELKGK 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 619 FSANERLLVQARKEAAELQLQKSQL---EELVQKAHEDIASVQEQHRMKIQQLLTLVDFKS-------NETERLVMELKS 688
Cdd:pfam05483 438 EQELIFLLQAREKEIHDLEIQLTAIktsEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLlenkeltQEASDMTLELKK 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 689 KTDEFQNQKRCDEAKLnalsEEIDKLKTRIAKLSDE----RDNLLEKNEKKDMELAANGEKDMVLQ----DKTAVIALLN 760
Cdd:pfam05483 518 HQEDIINCKKQEERML----KQIENLEEKEMNLRDElesvREEFIQKGDEVKCKLDKSEENARSIEyevlKKEKQMKILE 593
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 960479920 761 KEVTLLKDQVQT---YLEELH----TLKHSKNEKDEVIGKLQIDIGSLKLQYDNVK 809
Cdd:pfam05483 594 NKCNNLKKQIENknkNIEELHqenkALKKKGSAENKQLNAYEIKVNKLELELASAK 649
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
639-859 |
2.92e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 639 QKSQLEELvqkaHEDIASVQEQHRMKIQQLLTLvDFKSNETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRI 718
Cdd:TIGR04523 94 NKDKINKL----NSDLSKINSEIKNDKEQKNKL-EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQK 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 719 A-------KLSDERDNLLEKNEKKDMELAANGEKDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVI 791
Cdd:TIGR04523 169 EelenelnLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI 248
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 792 GKLQIDIGSLKLQYDNVKNLLSTKESEK-------SNLASQVLKLRRALESREGVKENGVTSDAKDNQHSNSKRI 859
Cdd:TIGR04523 249 SNTQTQLNQLKDEQNKIKKQLSEKQKELeqnnkkiKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKL 323
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
453-804 |
7.81e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 7.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 453 QGKEDELMLDALvkksdgiasSELEEKIVELSDEIELYKRDREDL---EMQMEQLALDYEILKQENHDIS---SRLEQTQ 526
Cdd:COG4717 62 QGRKPELNLKEL---------KELEEELKEAEEKEEEYAELQEELeelEEELEELEAELEELREELEKLEkllQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 527 LREQLRMQY--------ECSAHLSIISDLEANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARWNNA 598
Cdd:COG4717 133 ELEALEAELaelperleELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 599 TTAERLQEEFKSLSSQVSSAFSANERLLVQARKEAAELQL---------------------------------------- 638
Cdd:COG4717 213 EELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLliaaallallglggsllsliltiagvlflvlgllallfll 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 639 ---QKSQLEELVQKAhEDIASVQEQHRMKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRcdeaKLNALSEEIdklk 715
Cdd:COG4717 293 larEKASLGKEAEEL-QALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR----EAEELEEEL---- 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 716 tRIAKLSDERDNLLEKNEKKDME-LAANGEKDMVLQDKTAVIALLNKEVTLLKDQVQTYL---------EELHTLKHSKN 785
Cdd:COG4717 364 -QLEELEQEIAALLAEAGVEDEEeLRAALEQAEEYQELKEELEELEEQLEELLGELEELLealdeeeleEELEELEEELE 442
|
410
....*....|....*....
gi 960479920 786 EKDEVIGKLQIDIGSLKLQ 804
Cdd:COG4717 443 ELEEELEELREELAELEAE 461
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
275-735 |
1.19e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 275 AEDDVEKLRGEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGTKKTIHDANGSgkR 354
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQS--Y 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 355 LSDGEDPWSQVEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVE----------- 423
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVkeliiknldnt 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 424 -DHQEAQYEHALSNVHTAGHKIDMSETssyQGKEDELMLDALVKKsdgiaSSELEEKIVELSDEIELYKRDREDLEMQME 502
Cdd:TIGR04523 463 rESLETQLKVLSRSINKIKQNLEQKQK---ELKSKEKELKKLNEE-----KKELEEKVKDLTKKISSLKEKIEKLESEKK 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 503 QLALDYEILKQENHDISSRLEQTQLREQLRMQYEcsahlsIISDLEANVENLENelqAQSKrleadiAEVLAAKVEQEKR 582
Cdd:TIGR04523 535 EKESKISDLEDELNKDDFELKKENLEKEIDEKNK------EIEELKQTQKSLKK---KQEE------KQELIDQKEKEKK 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 583 AIKAEESlrkarwNNATTAERLQEEFKSLSSQvssafsaNERLLVQARKeaaeLQLQKSQLEELVQKAHEDIASVQEQHR 662
Cdd:TIGR04523 600 DLIKEIE------EKEKKISSLEKELEKAKKE-------NEKLSSIIKN----IKSKKNKLKQEVKQIKETIKEIRNKWP 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 663 ---MKIQQLLTLVDFKSNETERLVMEL-----KSKTDEFQNQkrcDEAKLNALSEEIDKLKTRIAKLSDERDNLLEKNEK 734
Cdd:TIGR04523 663 eiiKKIKESKTKIDDIIELMKDWLKELslhykKYITRMIRIK---DLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNK 739
|
.
gi 960479920 735 K 735
Cdd:TIGR04523 740 K 740
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
474-674 |
1.26e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 474 SELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLR-EQLRMQYEcsahlSIISDLEANVE 552
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAElAELEKEIA-----ELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 553 NLENELQAQSKRLEADIAEVL--AAKVEQEKRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFSANERLLVQAR 630
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLlsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 960479920 631 KEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLVDF 674
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
388-827 |
1.52e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 388 KMQESNSELLLAVKD---LDEVLEQKNREISILQEETVEDHQEAQ--YEHALSNVHTAGHKIDMSETSSYQGKEDELMLD 462
Cdd:TIGR00606 210 KYLKQYKEKACEIRDqitSKEAQLESSREIVKSYENELDPLKNRLkeIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 463 ALVKKSDGIASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLREQlRMQYECSAHLS 542
Cdd:TIGR00606 290 LKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQAD-RHQEHIRARDS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 543 IIsdleanvenLENELQAQSKRLEADiaevlaakvEQEKRAIKAEESLRKARwnnattaerlQEEFKSLSSQVSSAFSAN 622
Cdd:TIGR00606 369 LI---------QSLATRLELDGFERG---------PFSERQIKNFHTLVIER----------QEDEAKTAAQLCADLQSK 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 623 ERLlvqARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLvdfKSNETERLVMELKSKTDEFQNQKRCDEA 702
Cdd:TIGR00606 421 ERL---KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL---EGSSDRILELDQELRKAERELSKAEKNS 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 703 KLNALSEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAANGEKDMVLQDKTAVIALLNKEVTLLKDQVQTYL-------- 774
Cdd:TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkkq 574
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 775 --EELHTLKHSKNEKDEVIGKLQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVL 827
Cdd:TIGR00606 575 leDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
351-952 |
1.94e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 351 SGKRLSDGE----DPWSQVEELKQELGHE-KNLNADLRL-QLQKMQESNSELLLAVKDLDEVLEQK-NREISILQE-ETV 422
Cdd:TIGR01612 881 SDDKLNDYEkkfnDSKSLINEINKSIEEEyQNINTLKKVdEYIKICENTKESIEKFHNKQNILKEIlNKNIDTIKEsNLI 960
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 423 EDHQEAQYEHALSNVHTAGHKI--DMSeTSSYQGKEDELM-----LDALVKKSDG-----------IASSELEEKIVE-- 482
Cdd:TIGR01612 961 EKSYKDKFDNTLIDKINELDKAfkDAS-LNDYEAKNNELIkyfndLKANLGKNKEnmlyhqfdekeKATNDIEQKIEDan 1039
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 483 ----------------LSDEIE---------LYKRDREDLEMQMEQLALDYEILKQENHD-------ISSRLEQTQLREQ 530
Cdd:TIGR01612 1040 knipnieiaihtsiynIIDEIEkeigknielLNKEILEEAEINITNFNEIKEKLKHYNFDdfgkeenIKYADEINKIKDD 1119
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 531 LR-MQYECSAHLSIISDLEANVENLENELQAQSKRLEaDIAEvlaakveqekRAIKAE--ESLRKARWNNATTAER---L 604
Cdd:TIGR01612 1120 IKnLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLE-DVAD----------KAISNDdpEEIEKKIENIVTKIDKkknI 1188
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 605 QEEFKSLSSQVS------SAFSANERLLVQARKEAAELQLQKSQLEE--------LVQKAHEDIASVQEQHRMKIQQLLT 670
Cdd:TIGR01612 1189 YDEIKKLLNEIAeiekdkTSLEEVKGINLSYGKNLGKLFLEKIDEEKkksehmikAMEAYIEDLDEIKEKSPEIENEMGI 1268
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 671 LVDFKSnETERLVMELKSKTDEFQNQKRCDEAkLNALSEEIDKLKTRIAKLSDERDnlLEKNEKKDMELAA--NGEKDMV 748
Cdd:TIGR01612 1269 EMDIKA-EMETFNISHDDDKDHHIISKKHDEN-ISDIREKSLKIIEDFSEESDIND--IKKELQKNLLDAQkhNSDINLY 1344
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 749 LQDKTAV--IALLNKeVTLLKDQVQTYLEELHtlKHSKNEKDEV------IGKLQIDIgSLKLQYDNVKNLLSTKE---- 816
Cdd:TIGR01612 1345 LNEIANIynILKLNK-IKKIIDEVKEYTKEIE--ENNKNIKDELdkseklIKKIKDDI-NLEECKSKIESTLDDKDidec 1420
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 817 ------------SEKSNLASQvlkLRRALESREGVKENGVTSDAKDNQHSNSKRIKHDTGstgssyappsTDRHDAN-DD 883
Cdd:TIGR01612 1421 ikkikelknhilSEESNIDTY---FKNADENNENVLLLFKNIEMADNKSQHILKIKKDNA----------TNDHDFNiNE 1487
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 960479920 884 CNEH--SMRGAGAHADQSTKELDSLKEMNKAMQEELMELHERYSEISLK--FAEVEGERQQLVMTVRTLKNSL 952
Cdd:TIGR01612 1488 LKEHidKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKnkFAKTKKDSEIIIKEIKDAHKKF 1560
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
458-728 |
4.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 458 ELMLDAlvkksdgiasSELEEKIVELSDEIELYKRDREDLEMQMEQLaldyEILKQ--ENHDissrlEQTQLREQLRMQY 535
Cdd:COG4913 215 EYMLEE----------PDTFEAADALVEHFDDLERAHEALEDAREQI----ELLEPirELAE-----RYAAARERLAELE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 536 ECSAHLSI------ISDLEANVENLENELQaqskRLEADIAEVLAAKVEQEKRaikaEESLRKARWNNATTA-ERLQEEf 608
Cdd:COG4913 276 YLRAALRLwfaqrrLELLEAELEELRAELA----RLEAELERLEARLDALREE----LDELEAQIRGNGGDRlEQLERE- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 609 kslssqvssafsanerlLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEqhrmkiqqlltlvDFKSN--ETERLVMEL 686
Cdd:COG4913 347 -----------------IERLERELEERERRRARLEALLAALGLPLPASAE-------------EFAALraEAAALLEAL 396
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 960479920 687 KSKTDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDERDNL 728
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
475-660 |
5.85e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 5.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDissrlEQTQLREQLRMQYECSAHLSI--------ISD 546
Cdd:COG4942 59 ALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA-----QKEELAELLRALYRLGRQPPLalllspedFLD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 547 LEANVENLE---NELQAQSKRLEADIAEvLAAKVEQEKRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFSAne 623
Cdd:COG4942 134 AVRRLQYLKylaPARREQAEELRADLAE-LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAE-- 210
|
170 180 190
....*....|....*....|....*....|....*..
gi 960479920 624 rllvqARKEAAELQLQKSQLEELVQKAHEDIASVQEQ 660
Cdd:COG4942 211 -----LAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
364-595 |
8.65e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 8.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 364 QVEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQE-AQYEHALSNVHTAGH 442
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAElEAQKEELAELLRALY 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 443 KIdmsetssyqGKEDELMLdaLVKKSD---GIASSELEEKIVE-LSDEIELYKRDREDLEMQMEQLALDYEILKQenhdi 518
Cdd:COG4942 115 RL---------GRQPPLAL--LLSPEDfldAVRRLQYLKYLAPaRREQAEELRADLAELAALRAELEAERAELEA----- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 519 ssrLEQTQLREQLRMQYECSAHLSIISDLEANVENLENE---LQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARW 595
Cdd:COG4942 179 ---LLAELEEERAALEALKAERQKLLARLEKELAELAAElaeLQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
570-781 |
9.60e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 9.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 570 AEVLAAKVEQEKRAIKAE-ESLRKARWNNATTAERLQEEFKSLSSQVSSAF---SANERLLVQARKEAAELQLQKSQLEE 645
Cdd:COG4942 18 QADAAAEAEAELEQLQQEiAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 646 LVQKAHEDIAS-VQEQHRMKIQQLLTLV----DFksNETERLVMELKSKTDEFQNQkrcdEAKLNALSEEIDKLKTRIAK 720
Cdd:COG4942 98 ELEAQKEELAElLRALYRLGRQPPLALLlspeDF--LDAVRRLQYLKYLAPARREQ----AEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 960479920 721 LSDERDNLLEKNEKKDMELAANgekdmvLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLK 781
Cdd:COG4942 172 ERAELEALLAELEEERAALEAL------KAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
599-841 |
1.01e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 599 TTAERLQEEFKSLSSqvssafsanerllvqARKEAAELQLQKSQLEELVQkAHEDIASVQEQHRmKIQQLLTLVDFKSNE 678
Cdd:COG4913 225 EAADALVEHFDDLER---------------AHEALEDAREQIELLEPIRE-LAERYAAARERLA-ELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 679 TERlvmelksktDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDERDNLLEknekkdmELAANGEKDmvLQDKTAVIAL 758
Cdd:COG4913 288 RRL---------ELLEAELEELRAELARLEAELERLEARLDALREELDELEA-------QIRGNGGDR--LEQLEREIER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 759 LNKEVTLLKDQVQTYLEELHTLKHS------------------KNEKDEVIGKLQIDIGSLKLQYDNVKNLLSTKESE-- 818
Cdd:COG4913 350 LERELEERERRRARLEALLAALGLPlpasaeefaalraeaaalLEALEEELEALEEALAEAEAALRDLRRELRELEAEia 429
|
250 260
....*....|....*....|....*...
gi 960479920 819 -----KSNLASQVLKLRRALESREGVKE 841
Cdd:COG4913 430 slerrKSNIPARLLALRDALAEALGLDE 457
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
615-835 |
1.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 615 VSSAFSANERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQhrmkiqqlLTLVDFKSNETERLVMELKSKTDEFq 694
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ--------LAALERRIAALARRIRALEQELAAL- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 695 nqkrcdEAKLNALSEEIDKLKTRIAKLSDERDNLL---EKNEKKD-MELAANGEKDMVLQDKTAVIALLNKEVTLLKDQV 770
Cdd:COG4942 82 ------EAELAELEKEIAELRAELEAQKEELAELLralYRLGRQPpLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 960479920 771 QTYLEELHTLKHS----KNEKDEVIGKLQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVLKLRRALES 835
Cdd:COG4942 156 RADLAELAALRAEleaeRAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
292-842 |
1.44e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 292 KLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEglrgtkKTIHDANGSGKRLSDGEDPWSQVEELKQE 371
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELE------EVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 372 LGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILqEETVEDHQEAQYEhalsnvhtaghkidmSETSS 451
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL-EEKVKELKELKEK---------------AEEYI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 452 YQGKEDELMLDAL--VKKSDGIASSELEEkIVELSDEIELYKRDREDLEMQMEQLALDYEILKqENHDISSRLEQTQLR- 528
Cdd:PRK03918 297 KLSEFYEEYLDELreIEKRLSRLEEEING-IEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEEl 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 529 EQLRMQYECSahlsiisdleaNVENLENELQAQSKR---LEADIAEVLAAKVEQEKRA---IKAEESLRKARWNNATTAE 602
Cdd:PRK03918 375 ERLKKRLTGL-----------TPEKLEKELEELEKAkeeIEEEISKITARIGELKKEIkelKKAIEELKKAKGKCPVCGR 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 603 RLQEEFKslssqvssafsanERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQE--QHRMKIQQLLTLVDFKSNETE 680
Cdd:PRK03918 444 ELTEEHR-------------KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKvlKKESELIKLKELAEQLKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 681 RL----VMELKSKTDEFQNQKRcdeaKLNALSEEIDKLKTRIAKLSDERDNLLEKNEKKD----------MELAANGEKD 746
Cdd:PRK03918 511 KLkkynLEELEKKAEEYEKLKE----KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDeleeelaellKELEELGFES 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 747 M-VLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQI---DIGSLKLQYDNVKNLLSTKESEksNL 822
Cdd:PRK03918 587 VeELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAEtekRLEELRKELEELEKKYSEEEYE--EL 664
|
570 580
....*....|....*....|.
gi 960479920 823 ASQVLKLRRALES-REGVKEN 842
Cdd:PRK03918 665 REEYLELSRELAGlRAELEEL 685
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
364-771 |
1.49e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 364 QVEELKQELGHEKNLNADLRLQLQKM--QESNSELLLAVKDLDEVLEQKNREI-SILQEETVEDHQEAQYEHALSNVHTA 440
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLekLLQLLPLYQELEALEAELAELPERLeELEERLEELRELEEELEELEAELAEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 441 GHKIDMSETSSYQGKEDELmldalvkksdgiasSELEEKIVELSDEIELYKRDREDLEMQMEQLaldyeilKQENHDISS 520
Cdd:COG4717 176 QEELEELLEQLSLATEEEL--------------QDLAEELEELQQRLAELEEELEEAQEELEEL-------EEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 521 RLEQTQLREQLRMQYECSAHLSIISDLEANVENLENELQAQSKRLeADIAEVLAAKVEQEKRAIKAEESLRKARWNNATT 600
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVL-FLVLGLLALLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 601 AERLQEEFKSLSSQVSSAFSANERLLVQARKEAAELQLQKSQLEELVQKAHediasvQEQHRMKIQQLLTLVDFKSNET- 679
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ------LEELEQEIAALLAEAGVEDEEEl 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 680 -----------------ERLVMELKSKTDEFQNQKRCD------------EAKLNALSEEIDKLKTRIAKL--------- 721
Cdd:COG4717 388 raaleqaeeyqelkeelEELEEQLEELLGELEELLEALdeeeleeeleelEEELEELEEELEELREELAELeaeleqlee 467
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 960479920 722 SDERDNLLEKNEKKDMELAANGEKDMVLQdktAVIALLNKEVTLLKDQVQ 771
Cdd:COG4717 468 DGELAELLQELEELKAELRELAEEWAALK---LALELLEEAREEYREERL 514
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
399-841 |
1.69e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 399 AVKDLDEVLEQKNREiSILQEETVEDHQE--AQYEHALSNVHTAGHKI-DMSETSSYQGKEDELMLDALVKKSDgiASSE 475
Cdd:PRK02224 214 ELAELDEEIERYEEQ-REQARETRDEADEvlEEHEERREELETLEAEIeDLRETIAETEREREELAEEVRDLRE--RLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 476 LEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQE-----------NHDISSRLEQ--------TQLREQLR-MQY 535
Cdd:PRK02224 291 LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRleecrvaaqahNEEAESLREDaddleeraEELREEAAeLES 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 536 ECSAHLSIISDLEANVENLENELQAQSKRLEA-----DIAEVLAAKVEQEKRAIKAEE-----SLRKARwNNATTAERLQ 605
Cdd:PRK02224 371 ELEEAREAVEDRREEIEELEEEIEELRERFGDapvdlGNAEDFLEELREERDELREREaeleaTLRTAR-ERVEEAEALL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 606 EEFK--------SLSSQVSSAFSANERL------LVQARKEAAELQLQKSQLEELVQKahEDIASVQEQHRMKIQQLLTL 671
Cdd:PRK02224 450 EAGKcpecgqpvEGSPHVETIEEDRERVeeleaeLEDLEEEVEEVEERLERAEDLVEA--EDRIERLEERREDLEELIAE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 672 VDFKSNETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDERDNL------LEKNEKKDMELAANGEK 745
Cdd:PRK02224 528 RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELkeriesLERIRTLLAAIADAEDE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 746 DMVLQDKTAVIALLNkevtllkDQVQTYLEELHTLKHSKNEK--DEVIGKLQIDIGSLKLQYDNVKNLLSTKESEKSNLA 823
Cdd:PRK02224 608 IERLREKREALAELN-------DERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
490
....*....|....*...
gi 960479920 824 SQVLKLRRALESREGVKE 841
Cdd:PRK02224 681 AEIGAVENELEELEELRE 698
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
399-858 |
2.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 399 AVKDLDEVleQKNREISILQEETVEDHQEAQYEHALSNVHTAGHKIDMSETSSyqgKEDELMLDALVKKSDGIASSELEE 478
Cdd:PTZ00121 1228 AVKKAEEA--KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR---KADELKKAEEKKKADEAKKAEEKK 1302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 479 KIVELSDEIElYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLREQLRMQYECSAHLSIISDLEANVENLENEL 558
Cdd:PTZ00121 1303 KADEAKKKAE-EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 559 QAQSKRLEADIAEVLAAKVEQEKRaiKAEESLRKArwnnatTAERLQEEFKSLSSQVSSAFSANERllVQARKEAAELQL 638
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKK--KADELKKAA------AAKKKADEAKKKAEEKKKADEAKKK--AEEAKKADEAKK 1451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 639 ---QKSQLEELVQKAHE----DIASVQEQHRMKIQQLLTLVD--FKSNETERLVMELKSKTDEF---QNQKRCDEAKLNA 706
Cdd:PTZ00121 1452 kaeEAKKAEEAKKKAEEakkaDEAKKKAEEAKKADEAKKKAEeaKKKADEAKKAAEAKKKADEAkkaEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 707 LSEEIDKLK----TRIAKLSDERDNLLEKNEKKDMELAANGEKDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELHTLKH 782
Cdd:PTZ00121 1532 EAKKADEAKkaeeKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 960479920 783 SKNEKDEVIGKLQIDIGS---LKLQYDNVKNLLSTKESEKSNLASQVLKLRRALESREGVKENGVTSDAKDNQHSNSKR 858
Cdd:PTZ00121 1612 AKKAEEAKIKAEELKKAEeekKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
622-832 |
3.00e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.82 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 622 NERLLVQARKEAAElqlQKSQLEELvqkahedIASVQEQhRMKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRcde 701
Cdd:PRK00409 500 PENIIEEAKKLIGE---DKEKLNEL-------IASLEEL-ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED--- 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 702 aklNALSEEIDKLKTRIAKLSDERDNLL-EKNEKKDMELAANGEKDmvLQDKTAVIALLNKEVT---LLKDQVQTYLEE- 776
Cdd:PRK00409 566 ---KLLEEAEKEAQQAIKEAKKEADEIIkELRQLQKGGYASVKAHE--LIEARKRLNKANEKKEkkkKKQKEKQEELKVg 640
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 777 ----LHTLKH-----SKNEKDEVIgkLQIDIGSLKLQYDNVKNLLSTKESEKSNLASQVLKLRRA 832
Cdd:PRK00409 641 devkYLSLGQkgevlSIPDDKEAI--VQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRTV 703
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
475-592 |
3.20e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDR--------EDLEMQMEQLALDYEILKQENHDISSRLEQTQ-LREQLRMQYEcsahlsIIS 545
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQdeasferlAELRDELAELEEELEALKARWEAEKELIEEIQeLKEELEQRYG------KIP 488
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 960479920 546 DLEANVENLENELQAQSKRL-----EADIAEVLAAK--------VEQEK-RAIKAEESLRK 592
Cdd:COG0542 489 ELEKELAELEEELAELAPLLreevtEEDIAEVVSRWtgipvgklLEGEReKLLNLEEELHE 549
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
401-692 |
3.29e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 401 KDLDEVLEqKNREISILQ-EETVEDHQEAQYEHALSNVHTAGHKID-MSETSSYQGKEDELM-------LDALVKKSDGI 471
Cdd:PRK05771 16 SYKDEVLE-ALHELGVVHiEDLKEELSNERLRKLRSLLTKLSEALDkLRSYLPKLNPLREEKkkvsvksLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 472 AS------SELEEKIVELSDEIELYKRDREDLEmQMEQLALDYEILKqENHDISSRLEQTQlREQLRmqyecsaHLSIIS 545
Cdd:PRK05771 95 LEkiekeiKELEEEISELENEIKELEQEIERLE-PWGNFDLDLSLLL-GFKYVSVFVGTVP-EDKLE-------ELKLES 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 546 DLEaNVENLENELQ------AQSKRLEADIAEVLaAKVEQEKRAIKAEESlrkarwnnattaerLQEEFKSLSSQVSSaf 619
Cdd:PRK05771 165 DVE-NVEYISTDKGyvyvvvVVLKELSDEVEEEL-KKLGFERLELEEEGT--------------PSELIREIKEELEE-- 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 960479920 620 sanerllVQARKEAAelqlqKSQLEELVQKAHEDIASVQEqhrmkiqqLLtlvdfkSNETERLVMELKSKTDE 692
Cdd:PRK05771 227 -------IEKERESL-----LEELKELAKKYLEELLALYE--------YL------EIELERAEALSKFLKTD 273
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
275-750 |
3.99e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 275 AEDDVEKLRGEIGTLT-----RKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGT-----KKT 344
Cdd:COG4913 267 ARERLAELEYLRAALRlwfaqRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDrleqlERE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 345 IHDANgsgKRLSDGEDPWSQVEELKQELGHEKNLNADlrlQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVED 424
Cdd:COG4913 347 IERLE---RELEERERRRARLEALLAALGLPLPASAE---EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 425 HQEAQYEhaLSNVHTAGHKIDmsetssyqgKEDELMLDALVKKSdGIASSELeeKIV-ELsdeIELYKRDrEDLEMQMEQ 503
Cdd:COG4913 421 LRELEAE--IASLERRKSNIP---------ARLLALRDALAEAL-GLDEAEL--PFVgEL---IEVRPEE-ERWRGAIER 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 504 L----ALDyeILKQENH--DISSRLEQTQLREQLRMQ-YECSAHLSIISDLEAN--VENLENELQAQSKRLEADIAEVLA 574
Cdd:COG4913 483 VlggfALT--LLVPPEHyaAALRWVNRLHLRGRLVYErVRTGLPDPERPRLDPDslAGKLDFKPHPFRAWLEAELGRRFD 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 575 -AKVE------QEKRAI--------------KAEESLRKARW----NNATTAERLQEEFKSLSSQVSSAfsanERLLVQA 629
Cdd:COG4913 561 yVCVDspeelrRHPRAItragqvkgngtrheKDDRRRIRSRYvlgfDNRAKLAALEAELAELEEELAEA----EERLEAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 630 RKEAAELQLQKSQLEELVQKAHEDI--ASVQEQHRmKIQQLLTLVDFKSNETERLVMELKSKtdefqnqkrcdEAKLNAL 707
Cdd:COG4913 637 EAELDALQERREALQRLAEYSWDEIdvASAEREIA-ELEAELERLDASSDDLAALEEQLEEL-----------EAELEEL 704
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 960479920 708 SEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAANGEKDMVLQ 750
Cdd:COG4913 705 EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
291-857 |
4.80e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 291 RKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGT---KKTIHDANGSGKRLSDGEDPWSQVEE 367
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdeaKKKAEEDKKKADELKKAAAAKKKADE 1422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 368 LKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETVEDHQEAQYEHALSNVHTAGHKID-M 446
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADeA 1502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 447 SETSSYQGKEDELMLDALVKKSDGIASSELEEKIVELSDEIELYKRDredlemqmeqlaldyEILKQENhdiSSRLEQTQ 526
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---------------ELKKAEE---LKKAEEKK 1564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 527 LREQLRMQYEcsahlsiisDLEANVENLENELQAQSKRLEAdiaevlAAKVEQEKRAIKAEEsLRKARWNNATTAE-RLQ 605
Cdd:PTZ00121 1565 KAEEAKKAEE---------DKNMALRKAEEAKKAEEARIEE------VMKLYEEEKKMKAEE-AKKAEEAKIKAEElKKA 1628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 606 EEFKSLSSQVSSAFSANERLLVQARKEAAELQLQKSQL---EELVQKAHEDIASVQEQHRMKIQQLLtlvdfKSNETERL 682
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakkAEEDKKKAEEAKKAEEDEKKAAEALK-----KEAEEAKK 1703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 683 VMELKSKTDEfqNQKRCDEAKlnaLSEEIDKLKTRIAKLSDERDNLLEKNEKKDmelaaNGEKDMVLQDKTAViallNKE 762
Cdd:PTZ00121 1704 AEELKKKEAE--EKKKAEELK---KAEEENKIKAEEAKKEAEEDKKKAEEAKKD-----EEEKKKIAHLKKEE----EKK 1769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 763 VTLLKDQVQTYLEElhTLKHSKNEKDEVIGKLQIDI--GSLKLQYDNVKNLL---STKESEKSNLASQVLKLRRALESRE 837
Cdd:PTZ00121 1770 AEEIRKEKEAVIEE--ELDEEDEKRRMEVDKKIKDIfdNFANIIEGGKEGNLvinDSKEMEDSAIKEVADSKNMQLEEAD 1847
|
570 580
....*....|....*....|
gi 960479920 838 GVKENGVTSDAKDNQHSNSK 857
Cdd:PTZ00121 1848 AFEKHKFNKNNENGEDGNKE 1867
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
475-940 |
5.00e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDLEMQMEQLAL---DYEILKQENHDISSRLEQTQ--LREQLRmqyECSAHLSIISDLEA 549
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEvleEHEERREELETLEAEIEDLRetIAETER---EREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 550 NVENLE---NELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARwnnaTTAERLQEEFKSLSSQVSSAFSANERLl 626
Cdd:PRK02224 287 RLEELEeerDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR----VAAQAHNEEAESLREDADDLEERAEEL- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 627 vqaRKEAAELQLQKSQLEELVQKAHEDIASVQEQhrmkIQQLLTLVDFKSNETERLvmelksktdefqnqkrcdEAKLNA 706
Cdd:PRK02224 362 ---REEAAELESELEEAREAVEDRREEIEELEEE----IEELRERFGDAPVDLGNA------------------EDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 707 LSEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAA-----------NGEKDMVLQDKTAVIALLNKEVTLLKDQVQTYLE 775
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpveGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 776 ELHTLKHSKNEKDEvigklqidIGSLKLQYDNVKNLLSTKES---EKSNLASQVLKLRRALESREGVKEngvtsDAKDNQ 852
Cdd:PRK02224 497 RLERAEDLVEAEDR--------IERLEERREDLEELIAERREtieEKRERAEELRERAAELEAEAEEKR-----EAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 853 HSNSKRIKHDTGSTGSSYAPpSTDRHDANDDCNEHSMRGAGAHADQST--KELDSLKEMNKAMQEELMELHERYSEISLK 930
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAE-LKERIESLERIRTLLAAIADAEDEIERlrEKREALAELNDERRERLAEKRERKRELEAE 642
|
490
....*....|..
gi 960479920 931 F--AEVEGERQQ 940
Cdd:PRK02224 643 FdeARIEEARED 654
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
476-660 |
5.62e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 476 LEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLREQL-RMQYECSAHLSIISDLEANVENL 554
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLsELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 555 ENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARW-NNATTAERLQEEFKSLSSQVSsafSANERLLVQARKEA 633
Cdd:COG3206 246 RAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYtPNHPDVIALRAQIAALRAQLQ---QEAQRILASLEAEL 322
|
170 180
....*....|....*....|....*..
gi 960479920 634 AELQLQKSQLEELVQKAHEDIASVQEQ 660
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAELPEL 349
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
286-695 |
7.49e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 7.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 286 IGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGTKKTIHDANGSGKrlSDGEDPWSQV 365
Cdd:TIGR00606 697 ISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK--NDIEEQETLL 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 366 EELKQELGHEKNLNADL----RLQLQKMQESNSELLLAVK----DLDEVLEQKNREISILQEETVEDHQEAQYEHALSNV 437
Cdd:TIGR00606 775 GTIMPEEESAKVCLTDVtimeRFQMELKDVERKIAQQAAKlqgsDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQD 854
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 438 HTaghkidmSETSSYQGKEDELMLDALVKKSDGIASSELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHD 517
Cdd:TIGR00606 855 QQ-------EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 518 ISSRLEQTQLREQLRMQYECSAHLSIISDLEANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARWNN 597
Cdd:TIGR00606 928 LISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 598 ATTAER---LQEEFKSLssQVSSAFSANERLLVQARKEAAELQLqkSQLEELVQKAHEDIASVQEQHRMKIQQLltlvdf 674
Cdd:TIGR00606 1008 DTQKIQerwLQDNLTLR--KRENELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQ------ 1077
|
410 420
....*....|....*....|.
gi 960479920 675 KSNETERLVMELKSKTDEFQN 695
Cdd:TIGR00606 1078 KGYEKEIKHFKKELREPQFRD 1098
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
290-691 |
8.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 8.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 290 TRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRecegLRGTKKTIHDANGSGKRLsdgedpwsqvEELK 369
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR----LAEYSWDEIDVASAEREI----------AELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 370 QELGHEKNLNADLRlQLQKMQEsnsELLLAVKDLDEVLEQKNREISILQEEtVEDHQEAQyEHALSNVHTAGHKIDMSET 449
Cdd:COG4913 675 AELERLDASSDDLA-ALEEQLE---ELEAELEELEEELDELKGEIGRLEKE-LEQAEEEL-DELQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 450 SSYQGKEDELMLDALVKKsdgiASSELEEKIVELSDEIElykRDREDLEMQMEQLALDYEILKQE-NHDISSRLEQTQLR 528
Cdd:COG4913 749 ALLEERFAAALGDAVERE----LRENLEERIDALRARLN---RAEEELERAMRAFNREWPAETADlDADLESLPEYLALL 821
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 529 EQLRmqyecsahlsiISDLEANVENLENELQAQSKRleaDIAEvLAAKVEQEKRAIKaeeslrkarwnnattaERLQEEF 608
Cdd:COG4913 822 DRLE-----------EDGLPEYEERFKELLNENSIE---FVAD-LLSKLRRAIREIK----------------ERIDPLN 870
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 609 KSLSsqvSSAFSANERL-LVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLvdFKSNETERLVMELK 687
Cdd:COG4913 871 DSLK---RIPFGPGRYLrLEARPRPDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIER--LRSEEEESDRRWRA 945
|
....
gi 960479920 688 SKTD 691
Cdd:COG4913 946 RVLD 949
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
336-670 |
8.72e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 336 EGLRGTKKTIHDANGSGKRLsdgeDPWSQV--------EELKQELGHEKNLNADLRLQL------QKMQESNSELLLAVK 401
Cdd:PRK10929 48 EALQSALNWLEERKGSLERA----KQYQQVidnfpklsAELRQQLNNERDEPRSVPPNMstdaleQEILQVSSQLLEKSR 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 402 DLDEvlEQ-KNREIS-----ILQEETVEDHQEAQYE---HALSNVHT----AGHKIDMSETSSYQGKEDELMLDALvkks 468
Cdd:PRK10929 124 QAQQ--EQdRAREISdslsqLPQQQTEARRQLNEIErrlQTLGTPNTplaqAQLTALQAESAALKALVDELELAQL---- 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 469 dgiaSSELEEKIVELSdeIELYKRDREDLEMQMEQLALDYEILKQENHDISsrLEQT-QLREQlrmqyecSAHL--SIIS 545
Cdd:PRK10929 198 ----SANNRQELARLR--SELAKKRSQQLDAYLQALRNQLNSQRQREAERA--LESTeLLAEQ-------SGDLpkSIVA 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 546 DLEANVEnLENELQAQSKRLEAdIAE---VLAAKVEQEKRAIKAeesLR-KARWNNATTAerLQEefkSLSSQVSsafsa 621
Cdd:PRK10929 263 QFKINRE-LSQALNQQAQRMDL-IASqqrQAASQTLQVRQALNT---LReQSQWLGVSNA--LGE---ALRAQVA----- 327
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 960479920 622 neRL-----LVQARKEAAELQLQKSQLEELVQKAHEDIASVQ--------EQHRMKIQQLLT 670
Cdd:PRK10929 328 --RLpempkPQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQadgqpltaEQNRILDAQLRT 387
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
302-838 |
8.83e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.19 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 302 TLRKQIVKESRRGHDLSKEMSSLR----EERDALRRECEGLRGTKKTIHDANgsgKRLSDGEDPWSQVEELKQELGHEKn 377
Cdd:pfam05557 38 ALKRQLDRESDRNQELQKRIRLLEkreaEAEEALREQAELNRLKKKYLEALN---KKLNEKESQLADAREVISCLKNEL- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 378 lnADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILqEETVEDHQEAQYEHALSN--VHTAGHKIDMSETSSyqgk 455
Cdd:pfam05557 114 --SELRRQIQRAELELQSTNSELEELQERLDLLKAKASEA-EQLRQNLEKQQSSLAEAEqrIKELEFEIQSQEQDS---- 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 456 edelmldALVKKSdgiaSSELEeKIVELSDEIElykRDREDLEmQMEQLALDYEILKQENHDISSRLEQTQ-LREQLrmq 534
Cdd:pfam05557 187 -------EIVKNS----KSELA-RIPELEKELE---RLREHNK-HLNENIENKLLLKEEVEDLKRKLEREEkYREEA--- 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 535 yecsahlsiiSDLEANVENLENELQ-----AQSKRLEADIAEVLAAKVEQekraIKAEESLRKARWNNATTAER------ 603
Cdd:pfam05557 248 ----------ATLELEKEKLEQELQswvklAQDTGLNLRSPEDLSRRIEQ----LQQREIVLKEENSSLTSSARqlekar 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 604 --LQEEFKSLSSQVSSAFSANERLLVQARK-------EAAELQLQKSQLEELVQKAHEDIASVQEQHRMK-IQQLLTLVD 673
Cdd:pfam05557 314 reLEQELAQYLKKIEDLNKKLKRHKALVRRlqrrvllLTKERDGYRAILESYDKELTMSNYSPQLLERIEeAEDMTQKMQ 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 674 FKSNETERLVMELKSKTDEFQNQKRCDEAKLNAL------------SEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAA 741
Cdd:pfam05557 394 AHNEEMEAQLSVAEEELGGYKQQAQTLERELQALrqqesladpsysKEEVDSLRRKLETLELERQRLREQKNELEMELER 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 742 NGEKDMVLQDKTAVIallnkevtllkdqvqtYLEELHTLKHSKNEKDEViGKLQIDIGSLK----LQYDNVKNLLSTKES 817
Cdd:pfam05557 474 RCLQGDYDPKKTKVL----------------HLSMNPAAEAYQQRKNQL-EKLQAEIERLKrllkKLEDDLEQVLRLPET 536
|
570 580
....*....|....*....|.
gi 960479920 818 EKSNLASQVLKLRRALESREG 838
Cdd:pfam05557 537 TSTMNFKEVLDLRKELESAEL 557
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
475-750 |
9.45e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 9.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQLREQLRMQyecsahlsIISDLEANVENL 554
Cdd:pfam01576 633 EKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQ--------QVEEMKTQLEEL 704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 555 ENELQAQSK---RLEADIAEV-------LAAKVEQ--EK--------RAIKAE-ESLRKARWNNATTAERLQEEFKSLSS 613
Cdd:pfam01576 705 EDELQATEDaklRLEVNMQALkaqferdLQARDEQgeEKrrqlvkqvRELEAElEDERKQRAQAVAAKKKLELDLKELEA 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 614 QVSSAFSANERLLVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLVDFKSN--ETERLVMELKSKTD 691
Cdd:pfam01576 785 QIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDlaASERARRQAQQERD 864
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 960479920 692 EFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDERDnllekNEKKDMELAANGEKDMVLQ 750
Cdd:pfam01576 865 ELADEIASGASGKSALQDEKRRLEARIAQLEEELE-----EEQSNTELLNDRLRKSTLQ 918
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
626-794 |
1.08e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 626 LVQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRmKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKrcdeaKLN 705
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELE-DLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-----EYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 706 ALSEEIDKLKTRIAKLSDErdnLLEKNEKKDmelaangEKDMVLQDKTAVIALLNKEVTLLKDQVQTYLEELHT-LKHSK 784
Cdd:COG1579 93 ALQKEIESLKRRISDLEDE---ILELMERIE-------ELEEELAELEAELAELEAELEEKKAELDEELAELEAeLEELE 162
|
170
....*....|
gi 960479920 785 NEKDEVIGKL 794
Cdd:COG1579 163 AEREELAAKI 172
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
299-648 |
1.15e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 299 ELQTLRKQIVKESRRGHDLSKEMSSL--REE---------RDALRRECEGLRGTKKTIH---DANGSGKRLSDGEDpwsQ 364
Cdd:COG3096 293 ELFGARRQLAEEQYRLVEMARELEELsaRESdleqdyqaaSDHLNLVQTALRQQEKIERyqeDLEELTERLEEQEE---V 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 365 VEELKQELgheknlnADLRLQLQKMQESNSELLLAVKDLDEVL-EQKNR------------------EISILQEETVEDH 425
Cdd:COG3096 370 VEEAAEQL-------AEAEARLEAAEEEVDSLKSQLADYQQALdVQQTRaiqyqqavqalekaralcGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 426 QE---AQYEHALSNVHTAGHKIDMSETSSYQGKEdelMLDALVKKSDGIASSELEEKIVELSdeielykRDREDLEMQME 502
Cdd:COG3096 443 LAafrAKEQQATEEVLELEQKLSVADAARRQFEK---AYELVCKIAGEVERSQAWQTARELL-------RRYRSQQALAQ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 503 QLaldyEILKQENHDISSRLEQTQLREQLRMQYECSAHLSIisDLEANVENLENELQAQSKRLEADIAEVLA--AKVEQE 580
Cdd:COG3096 513 RL----QQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQL--DAAEELEELLAELEAQLEELEEQAAEAVEqrSELRQQ 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 581 KRAIKAE-ESLRK--ARWNNATTA-ERLQEE----FKSlSSQVSSAFSA---NERLLVQARKEAAELQLQ-KSQLEELVQ 648
Cdd:COG3096 587 LEQLRARiKELAAraPAWLAAQDAlERLREQsgeaLAD-SQEVTAAMQQlleREREATVERDELAARKQAlESQIERLSQ 665
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
417-645 |
1.54e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 417 LQEETVEDHQE---AQYEHALSNVHTAGHKIDMSETSSYQgkeDELMLDALVKKSDGIASSELEEKIVELSdeielykRD 493
Cdd:PRK04863 435 LTADNAEDWLEefqAKEQEATEELLSLEQKLSVAQAAHSQ---FEQAYQLVRKIAGEVSRSEAWDVARELL-------RR 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 494 REDLEMQMEQLaldyEILKQENHDISSRLEQTQLREQLRMQYECSAHLSIisDLEANVENLENELQAQSKRLEADIAEVL 573
Cdd:PRK04863 505 LREQRHLAEQL----QQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNL--DDEDELEQLQEELEARLESLSESVSEAR 578
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 574 AAK--VEQEKRAIKAEESLRKAR---WNNATTA-ERLQE----EFKSlSSQVSSAFSANERLLVQARKEAAELQLQKSQL 643
Cdd:PRK04863 579 ERRmaLRQQLEQLQARIQRLAARapaWLAAQDAlARLREqsgeEFED-SQDVTEYMQQLLERERELTVERDELAARKQAL 657
|
..
gi 960479920 644 EE 645
Cdd:PRK04863 658 DE 659
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
363-634 |
1.61e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 363 SQVEELKQELGHEKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEEtvEDHQEAQYEHALSnvhtagh 442
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE--IEERREELGERAR------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 443 kidmsetSSYQGKEDELMLDALVKK---SDGIASSELEEKIVEL-SDEIELYKRDREDLEMQMEQLaldyeilkqenhdi 518
Cdd:COG3883 94 -------ALYRSGGSVSYLDVLLGSesfSDFLDRLSALSKIADAdADLLEELKADKAELEAKKAEL-------------- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 519 ssrleQTQLREQLRMQYECSAHLSIISDLEANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARWNNA 598
Cdd:COG3883 153 -----EAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
250 260 270
....*....|....*....|....*....|....*.
gi 960479920 599 TTAERLQEEFKSLSSQVSSAFSANERLLVQARKEAA 634
Cdd:COG3883 228 AAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAG 263
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
299-669 |
1.63e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 41.98 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 299 ELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGTKKTIHDANGSG----KRLSDGEdpwSQVEELKQELGH 374
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGtpggKKYLLLQ---KQLEQLQEENFR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 375 EKNLNADLRL-------QLQKMQESNSEL------LLAVKDLDEVLEQKNREISILqEETVEdhqeaQYEHALSNVHTAG 441
Cdd:pfam05622 78 LETARDDYRIkceelekEVLELQHRNEELtslaeeAQALKDEMDILRESSDKVKKL-EATVE-----TYKKKLEDLGDLR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 442 HKIDMSETSSYQGKEDELMLDALVKKSDGiASSELE---EKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDI 518
Cdd:pfam05622 152 RQVKLLEERNAEYMQRTLQLEEELKKANA-LRGQLEtykRQVQELHGKLSEESKKADKLEFEYKKLEEKLEALQKEKERL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 519 SSrlEQTQLRE---QLR----MQYECSAHLSIISDLEANVENLENE------------LQAQSKRL--------EADIAE 571
Cdd:pfam05622 231 II--ERDTLREtneELRcaqlQQAELSQADALLSPSSDPGDNLAAEimpaeireklirLQHENKMLrlgqegsyRERLTE 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 572 VLAAKVEQEKRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVSSAFSAN------ERLLVQARKEAAELQLQKSQLEE 645
Cdd:pfam05622 309 LQQLLEDANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSllkqklEEHLEKLHEAQSELQKKKEQIEE 388
|
410 420
....*....|....*....|....*...
gi 960479920 646 LVQKA----HEDIASVQEQHRMKIQQLL 669
Cdd:pfam05622 389 LEPKQdsnlAQKIDELQEALRKKDEDMK 416
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
630-791 |
2.58e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.16 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 630 RKEAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLVDFKSNETERL----------VMELKSKTDEFQNQKRC 699
Cdd:smart00787 157 KEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAkeklkkllqeIMIKVKKLEELEEELQE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 700 DEAKLNALSEEIDKLKTRIAKLsderDNLLEKNEKKDmelaangekdmvlqdktaviallNKEVTLLKDQVQTyLEELHT 779
Cdd:smart00787 237 LESKIEDLTNKKSELNTEIAEA----EKKLEQCRGFT-----------------------FKEIEKLKEQLKL-LQSLTG 288
|
170
....*....|..
gi 960479920 780 LKHSKNEKDEVI 791
Cdd:smart00787 289 WKITKLSGNTLS 300
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
498-720 |
2.85e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 41.74 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 498 EMQMEQLALDYEILKQENHDISSRLEQTQLREQLRMQYECSAhlsiisdlEANV--ENLENELQAQSKRLEADI------ 569
Cdd:NF041483 82 QIQADQLRADAERELRDARAQTQRILQEHAEHQARLQAELHT--------EAVQrrQQLDQELAERRQTVESHVnenvaw 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 570 AEVLAAKVEQEKRAI------KAEESLRKARwnnaTTAERLQEEFKS-LSSQVSSAFSANERLLVQARKEAAELQLQKS- 641
Cdd:NF041483 154 AEQLRARTESQARRLldesraEAEQALAAAR----AEAERLAEEARQrLGSEAESARAEAEAILRRARKDAERLLNAASt 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 642 QLEELVQKAHE---DIASVQEQHRMKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRI 718
Cdd:NF041483 230 QAQEATDHAEQlrsSTAAESDQARRQAAELSRAAEQRMQEAEEALREARAEAEKVVAEAKEAAAKQLASAESANEQRTRT 309
|
..
gi 960479920 719 AK 720
Cdd:NF041483 310 AK 311
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
456-859 |
3.03e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 456 EDELMLDALVKKSDGIAS--SELEEKIVELSDEIELYKRDREDLEMQMEQLalDYEILKQENHDISSRLEQTQLREQLRM 533
Cdd:COG4913 285 FAQRRLELLEAELEELRAelARLEAELERLEARLDALREELDELEAQIRGN--GGDRLEQLEREIERLERELEERERRRA 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 534 QYEcsahlSIISDLEANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARwnnaTTAERLQEEFKSLSS 613
Cdd:COG4913 363 RLE-----ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR----RELRELEAEIASLER 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 614 QVSSaFSANerlLVQARKE-AAELQLQKSQL------------EE-----------------LVQKAHEDIAS------- 656
Cdd:COG4913 434 RKSN-IPAR---LLALRDAlAEALGLDEAELpfvgelievrpeEErwrgaiervlggfaltlLVPPEHYAAALrwvnrlh 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 657 -------------VQEQHRMKI--QQLLTLVDFKSNE-TERLVMELKSK--------TDEFQNQKR-------------- 698
Cdd:COG4913 510 lrgrlvyervrtgLPDPERPRLdpDSLAGKLDFKPHPfRAWLEAELGRRfdyvcvdsPEELRRHPRaitragqvkgngtr 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 699 --CD---------------EAKLNALSEEIDKLKTRIAKLSDERDNL---LEKNEKKDMELAANGEKDMV---------- 748
Cdd:COG4913 590 heKDdrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEERLEALeaeLDALQERREALQRLAEYSWDeidvasaere 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 749 LQDKTAVIALL---NKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQIDIGSLKLQYDNVKNLLSTKESEKSNLASQ 825
Cdd:COG4913 670 IAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
490 500 510
....*....|....*....|....*....|....
gi 960479920 826 VLKLRRALESREGVkENGVTSDAKDNQHSNSKRI 859
Cdd:COG4913 750 LLEERFAAALGDAV-ERELRENLEERIDALRARL 782
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
461-810 |
3.26e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 461 LDALVKKSDGIASSeLEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISS-RLEqtqLREQLRMQYECSA 539
Cdd:TIGR01612 542 IEAGLKESYELAKN-WKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKlKLE---LKEKIKNISDKNE 617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 540 HLSIISDLEANVENLENELQAQSKRLEADIAEVLAAKvEQEKRAIKAEESlrkarwnnattaERLQEEFKSLSSQVSSAF 619
Cdd:TIGR01612 618 YIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNK-DKIYSTIKSELS------------KIYEDDIDALYNELSSIV 684
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 620 SANerllvqarkeAAELQLQKSQLEELVQKAHEDIASVQEQHRMKIQQLLTLVDFKSNETERLVMELK-----------S 688
Cdd:TIGR01612 685 KEN----------AIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKkhihgeinkdlN 754
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 689 KT-DEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSDER---------DNLLEKNEKKDMELAANGEKDM-VLQDKTAVIA 757
Cdd:TIGR01612 755 KIlEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKnhyndqiniDNIKDEDAKQNYDKSKEYIKTIsIKEDEIFKII 834
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 960479920 758 llnKEVTLLKDQVQTYLEELHTLKHSKNEK--------DEVIGKLQIDIGSLKLQ-YDNVKN 810
Cdd:TIGR01612 835 ---NEMKFMKDDFLNKVDKFINFENNCKEKidseheqfAELTNKIKAEISDDKLNdYEKKFN 893
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
475-723 |
3.27e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDLEMQME----QLALDYEILKQENHDISSRLEQTQLREQLRMQYECSAhlsiisdlEAN 550
Cdd:COG3096 303 EEQYRLVEMARELEELSARESDLEQDYQaasdHLNLVQTALRQQEKIERYQEDLEELTERLEEQEEVVE--------EAA 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 551 VENLENELQAQSKRLEAD-----IAEVLAAKVEQEKRAI---KAEESLRKAR---------WNNA-------------TT 600
Cdd:COG3096 375 EQLAEAEARLEAAEEEVDslksqLADYQQALDVQQTRAIqyqQAVQALEKARalcglpdltPENAedylaafrakeqqAT 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 601 AERLQEEFK-SLSSQVSSAFSANERLL----------------VQARKEAAELQLQKSQLEELVQKAHEDIASVQEQHRm 663
Cdd:COG3096 455 EEVLELEQKlSVADAARRQFEKAYELVckiageversqawqtaRELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQN- 533
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 960479920 664 kIQQLLTLVDFKSN-------ETERLVMELKSKTDEFQNQKRCDEAKLNALSEEIDKLKTRIAKLSD 723
Cdd:COG3096 534 -AERLLEEFCQRIGqqldaaeELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
399-933 |
3.39e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 399 AVKDLDEVLEQKNREISILQEE------TVEDHQEAQYEHALS--NVHTAGHKIDMSETSSYQGKEDELMLDALVKKSDG 470
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELklqelkLKEQAKKALEYYQLKekLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 471 IASSELEEKIVELSD----EIELYKRDREDLEMQMEQLALDYEILKQENhDISSRLEQTQLREQLRMQYECSAHLSIISD 546
Cdd:pfam02463 254 ESSKQEIEKEEEKLAqvlkENKEEEKEKKLQEEELKLLAKEEEELKSEL-LKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 547 LEANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKAR--WNNATTAERLQEEFKSLSSQVSSAFSANER 624
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKleSERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 625 LLVQARKEAAELQLQKSQLEELVQKAhEDIASVQEQHRMKIQQLLTLVDFKSNETERLVMELKSKTDEFQNQKRCDEAKL 704
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEEEEES-IELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 705 NALSEEIDKLKTRIAKLSDERDNLLEKNEKKDMELAANGEKDMVLQD---KTAVIALLNKEVTLLKDQVQTYLEELHTLK 781
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVenyKVAISTAVIVEVSATADEVEERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 782 HSKNEKDEVIGKLQidigslklqyDNVKNLLSTKESEKSNLASQVLKLRRALESREGVKENGVTSDakdnqhsnSKRIKH 861
Cdd:pfam02463 572 ELPLGARKLRLLIP----------KLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG--------ILKDTE 633
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 960479920 862 DTGSTGSSYAPPSTDRHDANDDCNEHSMRGAGAHADQSTKELDSLKEMNKAMQEELMELHERYSEISLKFAE 933
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
395-617 |
3.42e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 395 ELLLAVK---DLDEVLEQKNREISilQEETVEDHQEaqyEHALSNVHTAGHKIDMSETSSYQGKED-ELMLDALVKKSDG 470
Cdd:PHA02562 157 EDLLDISvlsEMDKLNKDKIRELN--QQIQTLDMKI---DHIQQQIKTYNKNIEEQRKKNGENIARkQNKYDELVEEAKT 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 471 IAS--SELEEKIVELSDEIELYKRD-------REDLEMQMEQLALDYEILkqENHDI----SSRLEQTQ-----LREQLR 532
Cdd:PHA02562 232 IKAeiEELTDELLNLVMDIEDPSAAlnklntaAAKIKSKIEQFQKVIKMY--EKGGVcptcTQQISEGPdritkIKDKLK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 533 mqyECSAHLSIISDLEANVENLENELQAQSKR---LEADIAEV---LAAKVEQEKRAIKAEESLRKARWNNATTAERLQE 606
Cdd:PHA02562 310 ---ELQHSLEKLDTAIDELEEIMDEFNEQSKKlleLKNKISTNkqsLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386
|
250
....*....|.
gi 960479920 607 EFKSLSSQVSS 617
Cdd:PHA02562 387 ELDKIVKTKSE 397
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
578-835 |
3.49e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 578 EQEKRAIKAEESLRKARWNNATTAERLQEEFK----SLSSQVSSAFSANERLL-----VQARKEAAELQLQKSQLEELvq 648
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSlkaeVLIQKFGRSLKAKKRFSllkkeTIYLQSAQRVELAERQLQEL-- 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 649 kaHEDIASVQEQHRMKIQQLLTLVDFKSNETERLVMELKSKTDEFqnqkrcdeAKLNALSEEIDklktriakLSDERDNL 728
Cdd:COG5022 888 --KIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELI--------ARLKKLLNNID--------LEEGPSIE 949
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 729 LEKNEKKDMELAANGEKDMVLQDKTAvialLNKEVTLLKDQVQTYLEELHTLKHSKNEKDEVIGKLQIDIGSLK---LQY 805
Cdd:COG5022 950 YVKLPELNKLHEVESKLKETSEEYED----LLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKelpVEV 1025
|
250 260 270
....*....|....*....|....*....|..
gi 960479920 806 DNVKNLLSTKESEKSNLASQ--VLKLRRALES 835
Cdd:COG5022 1026 AELQSASKIISSESTELSILkpLQKLKGLLLL 1057
|
|
| fliH |
PRK06669 |
flagellar assembly protein H; Validated |
607-740 |
3.83e-03 |
|
flagellar assembly protein H; Validated
Pssm-ID: 235850 [Multi-domain] Cd Length: 281 Bit Score: 40.38 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 607 EFKSLSSQVSSAFSANERLLVQARKEAAELQLQKSQLEELVQkAHEDIASVQEQhrmKIQQLLTLVDFKSNETERLVMEL 686
Cdd:PRK06669 26 RFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEED-AFEIVEAAEEE---AKEELLKKTDEASSIIEKLQMQI 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 960479920 687 KSKTDEFQNQKR--CDEAK---------------LNALSEEIDKLKTRIAKLSDERDNLLEKNEKKDMELA 740
Cdd:PRK06669 102 EREQEEWEEELErlIEEAKaegyeegyekgreegLEEVRELIEQLNKIIEKLIKKREEILESSEEEIVELA 172
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
455-589 |
4.31e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 455 KEDELMLDALVKKSDGIASSELEEKIVELSDEIELYKRDREDLEMQMEQlaLDYEILKQENhdiSSRLEQTQLREQLRMQ 534
Cdd:COG2433 390 LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE--KDERIERLER---ELSEARSEERREIRKD 464
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 960479920 535 YEcsahlsiISDLEANVENLENELQAQSKRLEAdiaevLAAKVEQEKRAIKAEES 589
Cdd:COG2433 465 RE-------ISRLDREIERLERELEEERERIEE-----LKRKLERLKELWKLEHS 507
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
549-731 |
4.37e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 549 ANVENLENELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARwNNATTAERLQEEFKSLSSQVSsafsaNERLLVQ 628
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLE-LEIEEVEARIKKYEEQLGNVR-----NNKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 629 ARKEAAELQLQKSQLEELVQKAHEDIASVQEqhrmkiqqlltlvdfksneterlvmELKSKTDEFQNQKRCDEAKLNALS 708
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEE-------------------------ELAELEAELAELEAELEEKKAELD 148
|
170 180
....*....|....*....|...
gi 960479920 709 EEIDKLKTRIAKLSDERDNLLEK 731
Cdd:COG1579 149 EELAELEAELEELEAEREELAAK 171
|
|
| ClyA_XaxA-like |
cd22657 |
Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, and ... |
641-780 |
4.43e-03 |
|
Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, and similar proteins; This model includes Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, both parts of two-component alpha-helical pore-forming toxins (alpha-PFTs). The xaxAB genes encoding the XaxAB toxin have also been also identified in various plant and human pathogens. XaxAB triggers necrosis and apoptosis in both insect hemocytes and mammalian cells. Structure studies show that component A binds to component B's back, forming a subunit; twelve to fifteen of these subunits then conjoin as the pore-forming toxin. Component A stabilizes each subunit on the membrane and activates component B, which then punctures the membrane by swinging out its lower end. Similarly, Yersinia enterocolitica YaxA, encoded by the yaxAB gene, forms a pore predominantly composed of decamers of YaxA-YaxB heterodimers. Although both subunits bear membrane-active moieties, only YaxA is capable of binding to membranes by itself and YaxB is subsequently recruited to membrane-associated YaxA and induced to present its lytic transmembrane helices; pore formation then progresses by further oligomerization of YaxA-YaxB dimers. YaxAB has been found to be strongly upregulated by the Yersinia master regulator RovA, a transcriptional activator of Yersinia outer membrane protein invasion which is involved in bacterial attachment and invasion across the intestinal epithelium.
Pssm-ID: 439155 [Multi-domain] Cd Length: 306 Bit Score: 40.26 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 641 SQLEELVQKAHEDIasvqEQHRMKIQQLLTLVD-FKSNETERLVMELKSKTDEFQNQKRcdEAKLNALSEEIDKLKTRIA 719
Cdd:cd22657 91 SDLGEYLEDIKEDI----KEYSKSTEEVKARLDdFRDELREELIPEVKLKLKLIDRNDL--DEEIEELNEEIDELDEEID 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 720 KLSDERDNLLE----------------------KNEKkdmelaANGEKDMVLQDKTAVIALLNKEVTLLK--DQVQTYLE 775
Cdd:cd22657 165 ELNKEYKKLVGlaftglaggpigllitggifgvKAEK------IRKERNELIAEREELIQKLKSKNRLLGslERLETDLQ 238
|
....*
gi 960479920 776 ELHTL 780
Cdd:cd22657 239 DLDIR 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
282-532 |
4.62e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 282 LRGEIGTLTRKLDVSDMELQTLRKQ--IVKESRRGHDLSKEMSSLREERDALRRECEGLRGTKKTIHDANGSGKRLSDGE 359
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 360 DPWSQVEELKQELgheKNLNADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISILQEETvedhqEAQYEHALSNVht 439
Cdd:COG3206 260 LQSPVIQQLRAQL---AELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASL-----EAELEALQARE-- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 440 aghkidmsetssyqgkedelmldalvkksdgiasSELEEKIVELSDEIELYKRdredLEMQMEQLALDYEILKQENHDIS 519
Cdd:COG3206 330 ----------------------------------ASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLL 371
|
250
....*....|...
gi 960479920 520 SRLEQTQLREQLR 532
Cdd:COG3206 372 QRLEEARLAEALT 384
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
276-605 |
6.97e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 6.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 276 EDDVEKLRGEIGTLTRKLDVSDMELQTLRKQIVKESRRGHDLSKEMSSLREERDALRRECEGLRGTKKTIHDANGSGKRL 355
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAL 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 356 SDG-------------------EDPWSQVEELKQELgheknlnADLRLQLQKMQESNSELLLAVKDLDEVLEQKNREISI 416
Cdd:PRK02224 449 LEAgkcpecgqpvegsphvetiEEDRERVEELEAEL-------EDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDL 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 417 lqEETVEDHQE--AQYEHALSNVHTAGHKIDmsetSSYQGKEDELMLDALVKKSDGIASSELEEKIVELSDEIELYKRDR 494
Cdd:PRK02224 522 --EELIAERREtiEEKRERAEELRERAAELE----AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 495 EDLEmQMEQLALDYEILKQENHDISSRleQTQLREQLRMQYEcsahlsIISDLEANV-ENLENELQAQSKRLEADIAEV- 572
Cdd:PRK02224 596 TLLA-AIADAEDEIERLREKREALAEL--NDERRERLAEKRE------RKRELEAEFdEARIEEAREDKERAEEYLEQVe 666
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 960479920 573 --LAAKVEQE----------KRAIKAEESLRKARWNNATTAERLQ 605
Cdd:PRK02224 667 ekLDELREERddlqaeigavENELEELEELRERREALENRVEALE 711
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
277-860 |
8.25e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.42 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 277 DDVEKLRGEIGTLTRKLDVSDMELQTLRKqivKESRRGHDLSKEMSSLREERDAL--RRECEGLR----------GTKKT 344
Cdd:TIGR01612 1111 DEINKIKDDIKNLDQKIDHHIKALEEIKK---KSENYIDEIKAQINDLEDVADKAisNDDPEEIEkkienivtkiDKKKN 1187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 345 IHD-ANGSGKRLSDGEDPWSQVEELKQ-ELGHEKNLNadlRLQLQKMQES--NSELLLA-----VKDLDEVLEQKNreiS 415
Cdd:TIGR01612 1188 IYDeIKKLLNEIAEIEKDKTSLEEVKGiNLSYGKNLG---KLFLEKIDEEkkKSEHMIKameayIEDLDEIKEKSP---E 1261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 416 ILQEETVEDHQEAQYEhaLSNVHTAGHKiDMSETSSyqgKEDELMLDALVKKSDGIASSELEEKIVELSDEIELYKRDRE 495
Cdd:TIGR01612 1262 IENEMGIEMDIKAEME--TFNISHDDDK-DHHIISK---KHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQ 1335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 496 ----DLEMQMEQLALDYEILKQEN--HDISSRLEQTQLREQL--RMQYECSAHLSIISDLEANVENLENELQAQSKRLEA 567
Cdd:TIGR01612 1336 khnsDINLYLNEIANIYNILKLNKikKIIDEVKEYTKEIEENnkNIKDELDKSEKLIKKIKDDINLEECKSKIESTLDDK 1415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 568 DIAEVLaAKVEQEKRAIKAEESlrkarwNNATTAERLQEEFKSLSSQVSSAFSANER----LLVQARKEAAELQLQKSQL 643
Cdd:TIGR01612 1416 DIDECI-KKIKELKNHILSEES------NIDTYFKNADENNENVLLLFKNIEMADNKsqhiLKIKKDNATNDHDFNINEL 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 644 EELVQKA--HEDIASVQEQHRMKIQQLLTlvDFKSNETERL----VMELKSKTDEFQNQKrcdeaklNALSEEIDKLKTR 717
Cdd:TIGR01612 1489 KEHIDKSkgCKDEADKNAKAIEKNKELFE--QYKKDVTELLnkysALAIKNKFAKTKKDS-------EIIIKEIKDAHKK 1559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 718 I---AKLSDERDNLLEKNEKKDMELAANGEKD--MVLQDKTAVIALLNK--EVTLLKDQVQTYLEELHTLKH-----SKN 785
Cdd:TIGR01612 1560 FileAEKSEQKIKEIKKEKFRIEDDAAKNDKSnkAAIDIQLSLENFENKflKISDIKKKINDCLKETESIEKkissfSID 1639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 786 EKD-------EVIGKLQIDIGSLKLQYDNVKNllstKESEKSNLASQVLKLRRALESREGVKENGVTSDAKDNQHSNSKR 858
Cdd:TIGR01612 1640 SQDtelkengDNLNSLQEFLESLKDQKKNIED----KKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEE 1715
|
..
gi 960479920 859 IK 860
Cdd:TIGR01612 1716 IE 1717
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
475-616 |
8.98e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 475 ELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQENHDISSRLEQTQ-LREQLRMQYEcsahlsiISDLEANVEN 553
Cdd:COG1579 35 ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnNKEYEALQKE-------IESLKRRISD 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 960479920 554 LEN---ELQAQSKRLEADIAEVLAAKVEQEKRAIKAEESLRKARWNNATTAERLQEEFKSLSSQVS 616
Cdd:COG1579 108 LEDeilELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
474-575 |
9.66e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 960479920 474 SELEEKIVELSDEIELYKRDREDLEMQMEQLALDYEILKQEN---HDISSRLEqtQLREQLRMQYECS----AHLSIISD 546
Cdd:COG3096 560 AELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApawLAAQDALE--RLREQSGEALADSqevtAAMQQLLE 637
|
90 100
....*....|....*....|....*....
gi 960479920 547 LEANVENLENELQAQSKRLEADIAEVLAA 575
Cdd:COG3096 638 REREATVERDELAARKQALESQIERLSQP 666
|
|
| |
