GEO DataSets

(Submitter supplied) We compared the transcriptomes of S. flexneri strains expressing the diguanylate cyclase VCA0956 (derived from V. cholerae)

Organism:

Shigella flexneri 2a str. 2457T

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30069

6 Samples

Download data: XLSX

(Submitter supplied) S. flexneri infected Henle-407 cells were treated with and without 20 mM formate, RNA-seq was used to determine transcriptome changes

Organism:

Homo sapiens; Shigella flexneri 2a str. 2457T

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL18573 GPL25540

3 Samples

Download data: XLSX

(Submitter supplied) Comparison of wild type S. flexneri 2457T gene expression to deletion mutant of S. flexneri 2457T gene S4473 at three growth phases and intracellularly

Organism:

Shigella flexneri 2a str. 2457T; Shigella; Escherichia coli

Type:

Expression profiling by array

Platform:

GPL13175

14 Samples

Download data: CEL, CHP

(Submitter supplied) Comparative genomic hybridization between Escherichia coli strains to determine core and pan genome content of clinical and environmental isolates

Organism:

Escherichia coli O157:H7 str. Sakai; Escherichia albertii TW07627; Escherichia sp. TW11930; Escherichia sp. TW14264; Escherichia sp. TW14266; Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia albertii; Escherichia sp. TW09254; Escherichia sp. TW09266; Escherichia sp. TW09276; Escherichia sp. TW09308; Escherichia sp. TW14263; Shigella flexneri 2a str. 2457T; Escherichia coli CFT073; Escherichia coli 042; Escherichia coli str. K-12 substr. MG1655; Escherichia sp. TW09231; Escherichia sp. TW11588; Escherichia sp. TW11966; Escherichia sp. TW14265; Escherichia sp. TW14267; Escherichia sp. Z205; Escherichia coli O127:H6 str. E2348/69; Escherichia sp. RL325/96; Escherichia sp. TW14182

Type:

Genome variation profiling by array

Platform:

GPL15851

50 Samples

Download data: GPR

(Submitter supplied) Investigation of whole genome gene expression to identify overlooked sRNAs and sORFs. Background The completion of numerous genome sequences has introduced an era of whole-genome study. However, many real genes, including small RNAs (sRNAs) and small ORFs (sORFs), are missed in genome annotation. In order to improve genome annotation, we sought to identify novel sRNAs and sORFs in Shigella, the principal etiologic agents of bacillary dysentery or shigellosis. more...

Organism:

Shigella flexneri 2a str. 301

Type:

Expression profiling by genome tiling array

Platform:

GPL10653

15 Samples

Download data: PAIR

(Submitter supplied) To obtain a global view of the response of S. flexneri at the expression level induced by temperature up-shift, we compared the expression profiles of log-phase and stationary-phase cells grown at 30 degrees and 37 degrees Celsius.

Organism:

Shigella flexneri 2a str. 2457T; Shigella flexneri

Type:

Expression profiling by array

Platform:

GPL7185

4 Samples

Download data: PAIR

(Submitter supplied) To find the alterations of expression profiles of shigella flexneri, we performed DNA chip analysis and proteomic analysis at the same time.

Organism:

Shigella flexneri 2a str. 2457T; Shigella flexneri

Type:

Expression profiling by array

Platform:

GPL7185

2 Samples

Download data: PAIR

(Submitter supplied) In this study, we analyzed the expression profiles of a virulence plasmid-cured strain and wild-type strain of shigella flexneri. The results showed that the genes of glp regulon were upregulated in mutant bacteria in stationary phase cultures.

Organism:

Shigella flexneri; Shigella flexneri 2a str. 2457T

Type:

Expression profiling by array

Platform:

GPL7185

4 Samples

Download data: PAIR

(Submitter supplied) Background Compelling evidence indicates that Shigella species, the etiologic agents of bacillary dysentery, as well as enteroinvasive Escherichia coli, are derived from multiple origins of Escherichia coli and form a single pathovar. To further understand the genome diversity and virulence evolution of Shigella, comparative genomic hybridization microarray analysis was employed to compare the gene content of E. more...

Organism:

Shigella boydii; Shigella flexneri 2a str. 301; Shigella dysenteriae Sd197; Shigella sonnei Ss046; Escherichia coli; Shigella dysenteriae; Shigella flexneri; Escherichia coli K-12; Shigella boydii Sb227

Type:

Genome variation profiling by array

Platform:

GPL3925

117 Samples

Download data

(Submitter supplied) NimbleGen design name 2007-02-12_CSB_Sflexneri_tiling, design for Shigella flexneri 2a strain 301 and associated plasmid pCP301. The design includes random GC and other control probes. The .ndf file is linked below as a supplementary file. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Organism:

Shigella flexneri 2a str. 301

1 Series

15 Samples

Download data: NDF

(Submitter supplied) Maskless Array Synthesizer (MAS) technology Protocol: Available at manufacturer's website: www.nimblegen.com

Organism:

Shigella flexneri 2a str. 2457T

3 Series

8 Samples

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(Submitter supplied) A microarray with 6528 spot features. Tip configuration: Standard 16-tip steel pin Columns per Sector: 24 Rows per Sector: 17 Column spacing: 180 um Row spacing: 180 um Protocol: The PCR products were spotted onto glass slides to make DNA arrays as described in MGUIDE at http://cmgm.stanford.edu/pbrown/mguide/index.html and protocols on http://www.microarrays.org/

Organism:

Escherichia coli K-12; Shigella flexneri 2a str. 301; Shigella dysenteriae Sd197; Shigella boydii Sb227; Shigella sonnei Ss046

1 Series

117 Samples

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