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Platform GPL10653 Query DataSets for GPL10653
Status Public on Jun 27, 2011
Title Sf301_Nimblegen_380k array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Shigella flexneri 2a str. 301
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description NimbleGen design name 2007-02-12_CSB_Sflexneri_tiling, design for Shigella flexneri 2a strain 301 and associated plasmid pCP301. The design includes random GC and other control probes.
The .ndf file is linked below as a supplementary file.
 
Submission date Jul 07, 2010
Last update date Jun 27, 2011
Contact name Junping Peng
E-mail(s) [email protected]
Organization name Chinese center for disease control and prevention
Lab State key lab for molecular virology and genetic engineering
Street address No 6, Rongjing Eastern Street, BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Samples (15) GSM563609, GSM563610, GSM563611, GSM563612, GSM563613, GSM563614 
Series (1)
GSE22800 Expression analysis of Shigella flexneri 2a strain 301

Data table header descriptions
ID
Type
SEQUENCE
RANGE_GB
RANGE_START

Data table
ID Type SEQUENCE RANGE_GB RANGE_START
AE005674FS000000001 FORWARD-experimental AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGT AE005674 1
AE005674FS000000026 FORWARD-experimental CAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTAC AE005674 26
AE005674FS000000051 FORWARD-experimental AAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGTAAATTAAAATT AE005674 51
AE005674FS000000076 FORWARD-experimental AACTGGTTACCTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGTCACTAA AE005674 76
AE005674FS000000101 FORWARD-experimental TAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGCACA AE005674 101
AE005674FS000000126 FORWARD-experimental AAATACTTTAACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGTACACAA AE005674 126
AE005674FS000000151 FORWARD-experimental GCGCACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCA AE005674 151
AE005674FS000000176 FORWARD-experimental AGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATC AE005674 176
AE005674FS000000201 FORWARD-experimental TAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGG AE005674 201
AE005674FS000000226 FORWARD-experimental ACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAA AE005674 226
AE005674FS000000251 FORWARD-experimental GCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGG AE005674 251
AE005674FS000000276 FORWARD-experimental AAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTCGACCAAAGGTAACGA AE005674 276
AE005674FS000000301 FORWARD-experimental CTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGT AE005674 301
AE005674FS000000326 FORWARD-experimental GGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATG AE005674 326
AE005674FS000000351 FORWARD-experimental TTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGA AE005674 351
AE005674FS000000376 FORWARD-experimental CAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAG AE005674 376
AE005674FS000000401 FORWARD-experimental TATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTG AE005674 401
AE005674FS000000426 FORWARD-experimental GGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCT AE005674 426
AE005674FS000000451 FORWARD-experimental CCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATT AE005674 451
AE005674FS000000476 FORWARD-experimental GGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATA AE005674 476

Total number of rows: 389307

Table truncated, full table size 41680 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10653_2007-02-02_CSB_Sflexneri_tiling.ndf.gz 17.0 Mb (ftp)(http) NDF

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