GEO DataSets

(Submitter supplied) Investigation of whole genome gene expression level changes during plant infection in the PecS regulatory mutant compared to the wild type strain. PecS is a global regulator of virulence in D. dadantii and the PecS mutant is hypervirulent.

Organism:

Dickeya dadantii 3937

Type:

Expression profiling by array

Platform:

GPL16335

13 Samples

Download data: PAIR, TXT

(Submitter supplied) Growth in 0.3 M NaCl M63 minimal medium affects the transcriptome of Dickeya dadantii 3937.in comparison to that of cells grown in M63 medium.

Organism:

Dickeya dadantii 3937

Type:

Expression profiling by array

Platform:

GPL19609

4 Samples

Download data: FTR, TXT

(Submitter supplied) Investigation of whole genome gene expression level changes in the phytopathogenic Dickeya dadantii wild-type strain 3937 during an acute per os infection of an aphid body, in comparison with a colony grown in standard LB medium. The pathosystem described in this study has been analysed and first published in Grenier et al. 2006, and further detailed in Costechareyre et al. 2011

Organism:

Dickeya dadantii 3937

Type:

Expression profiling by array

Platform:

GPL16335

6 Samples

Download data: CALLS, PAIR

(Submitter supplied) Background Dickeya dadantii is a necrotrophic pathogen causing disease in many plants. Previous studies have demonstrated that the type III secretion system (T3SS) of D. dadantii is required for full virulence. HrpL is an alternative sigma factor that binds to the hrp box promoter sequence of T3SS genes to up-regulate their expression. Methodology/Principal Findings To explore the inventory of HrpL-regulated genes of D. more...

Organism:

Dickeya dadantii

Type:

Expression profiling by array

Platform:

GPL8881

20 Samples

Download data: GPR

(Submitter supplied) design name: 2005-05-31_Ogg_Erwinia_24mer DESIGN_ID: 2181 A 1:2 expression design for 4597 genes from Dickeya dadantii 3937 with 20 24-mer probe pairs (PM/MM) per gene. Each probe is replicated 2 times. The design includes random GC and other control probes. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Organism:

Dickeya dadantii 3937

1 Series

4 Samples

Download data: NDF, NGD

(Submitter supplied) NimbleGen design name 080627_Erwinia _chrysanthemi_expr, NimbleGen design ID 7805 A 1:2 expression design for 4597 genes from Dickeya dadantii 3937 with 5 70-mer probe pairs (PM/MM) per gene. Each probe is replicated 3 times. The design includes random GC and other control probes. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Organism:

Dickeya dadantii 3937

2 Series

19 Samples

Download data: NDF, NGD

(Submitter supplied) Dickeya dadantii 3937 Protocol: See Agilent Technologies website

Organism:

Dickeya dadantii

1 Series

20 Samples

Download data: GAL