GEO DataSets

(Submitter supplied) transcriptome approach was performed at three stages of seed development during seed filling, seed maturation and seed maturity to compare between seed transcriptomes from Xcf-inoculated and water-inoculated seeds.

Organism:

Phaseolus vulgaris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24868

18 Samples

Download data: CSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Phaseolus vulgaris; Xanthomonas citri pv. fuscans

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

4 related Platforms

53 Samples

Download data: BW, SF, TXT

(Submitter supplied) To investigate the bacterial functions involved in seed contamination during their formation, we sequenced bacterial mRNA at 24, 35 and 42 days after pollination (DAP). Gene expression was compared between the different stages.

Organism:

Xanthomonas citri pv. fuscans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33255

17 Samples

Download data: SF

(Submitter supplied) Transcriptome approach of small RNA was performed at two stages of seed development during early maturation (24DAP) and seed maturity (42DAP) to differentially profile smallRNA accumulation from Xcf-inoculated and water-inoculated seeds.

Organism:

Phaseolus vulgaris

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL33228

12 Samples

Download data: TXT

(Submitter supplied) DNA Methylation profiling was performed at seed maturity to compare between seed methylomes from Xcf-inoculated and water-inoculated seeds.

Organism:

Phaseolus vulgaris

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL33227

6 Samples

Download data: BW

(Submitter supplied) Transcriptional profiling of seeds of Medicago truncatula during maturation. To identify genes that are regulated during seed maturation in the model legume Medicago truncatula, plants at flowering stage were grown at controlled temperature of 21-19°C, 16h light. Seeds were then collected at different stages of development. Using the Medicago NimbleGen chip, a transcriptomic analysis was performed to follow the differential expression of genes during seed maturation.

Organism:

Medicago truncatula

Type:

Expression profiling by array

Platform:

GPL16373

32 Samples

Download data: PAIR

(Submitter supplied) Plant pathogenic bacteria disseminate and survive through transmission to and by seeds of hosts and non-hosts plants. To investigate the interaction between xanthomonads and developing seeds of Medicago truncatula, plants at the flower bud stage were spray inoculated until runoff with xanthomonads suspensions. Using the Medicago NimbleGen chip, a transcriptomic analysis was performed on seeds to characterize the molecular dialogue between Xanthomonas campestris pv. more...

Organism:

Medicago truncatula

Type:

Expression profiling by array

Platform:

GPL16373

24 Samples

Download data: PAIR

(Submitter supplied) Background: Common bacterial blight (CBB) caused by Xanthomonas phaseoli pv. phaseoli and Xanthomonas citri pv. fuscans is one of the major threats to common bean crops (Phaseolus vulgaris L.). Resistance to CBB is particularly complex as 26 quantitative resistance loci to CBB have been described so far. To date, transcriptomic studies after CBB infection have been very scarce and the molecular mechanisms underlying susceptibility or resistance are largely unknown. more...

Organism:

Phaseolus vulgaris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28927

12 Samples

Download data: TXT

(Submitter supplied) Analysis of barley grains/seedlings representing six well characterized and distinct germination stages over the course of seed germination and seedling growth.

Organism:

Hordeum vulgare

Type:

Expression profiling by array

Platform:

GPL1340

18 Samples

Download data: CEL

(Submitter supplied) The plant pathogen Pseudomonas syringae pv. syringae B728a grows and survives on leaf surfaces and in the leaf apoplast of its host, bean. Global transcriptome profiling was used to understand the contribution of distinct regulators to B728a fitness and pathogenicity. We performed a transcriptome analysis of B728a and nine regulator mutants recovered from the surface and interior of leaves and exposed to various environmental stresses in culture. more...

Organism:

Pseudomonas syringae pv. syringae B728a; Pseudomonas syringae

Type:

Expression profiling by array

Platform:

GPL16328

165 Samples

Download data: PAIR, TXT

(Submitter supplied) In addition to the evolutionarily-conserved Ca2+ sensor, calmodulin (CaM), plants possess a large family of CaM-related proteins (CMLs). Using a cml39 loss-of-function mutant, we investigated the roles of CML39 in Arabidopsis and discovered a range of phenotypes across developmental stages and in different tissues. In mature plants, loss of CML39 results in shorter siliques, reduced seed number per silique, and reduced number of ovules per pistil. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17639

4 Samples

Download data: TXT

(Submitter supplied) The zig-zag model of host-pathogen interaction describes the relative strength of defense response across a spectrum of pathogen-induced plant phenotypes. A stronger defense response results in increased resistance. Here, we investigate the strength of pathogen virulence during disease and place these findings in the context of the zig-zag model. Xanthomonas vasicola pv. holcicola (Xvh) causes sorghum bacterial leaf streak. more...

Organism:

Xanthomonas vasicola; Sorghum bicolor

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL27912 GPL27913 GPL27914

21 Samples

Download data: TXT