GEO DataSets

(Submitter supplied) We sequenced the complete genome of an ectophytic fungus, Ramichloridium luteum, which colonizes the surface of apple fruit, and carried out comparative genomic and transcriptome analysis

Organism:

Ramichloridium luteum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23608

6 Samples

Download data: TXT

(Submitter supplied) RNA sequencing was applied to compare the transcriptome profiles of mycelium on potato dextrose (PD) for 5days, mycelium on PD for 15days and mycelium on PD + PEG6000 for 15days,

Organism:

Peltaster fructicola

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25732

3 Samples

Download data: GTF, TXT

(Submitter supplied) The transcriptome of Leptosphaeria maculans was analyzed in mycelium and during oilseed rape (Brassica napus) leaf infection. The array probes were designed from gene models from the L. maculans whole genome annotation. One aim of this study was to verify the expression of the automatically annotated gene models in various conditions. Another goal was to monitor gene expression profiles during oilseed rape leaf infection and to highlight tissue-specific transcripts, e.g. more...

Organism:

Plenodomus lingam; Brassica napus

Type:

Expression profiling by array

Platform:

GPL13139

9 Samples

Download data: PAIR

(Submitter supplied) We performed RNA-sequencing of Bgh-infected barley leaves at two different time-points after infection to examine gene expression in the barley powdery mildew isolate DH14 during plant pathogenesis.

Organism:

Blumeria hordei

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22002

2 Samples

Download data: TXT

(Submitter supplied) The Transcriptome of different tissues and developmental stages of Tuber melanosporum was analyzed. The array probes were designed from gene models taken from the French Genoscope - Centre National de Séquençage Tuber melanosporum genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. more...

Organism:

Corylus avellana; Tuber melanosporum

Type:

Expression profiling by array

Platform:

GPL8982

16 Samples

Download data: TXT

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Cenococcum geophilum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 3 months, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Cenococcum geophilum (http://genome.jgi.doe.gov/Cenge3/Cenge3.home.html) reference transcripts using CLC Genomics Workbench 6.

Organism:

Cenococcum geophilum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22097

6 Samples

Download data: TXT

(Submitter supplied) To identify specific gene networks induced in host roots by C. geophilum, we inoculated seedlings of Scots pine simultaneously with C. geophilum and either Suillus granulatus or Rhizopogon roseolus, two common ECM fungi associated to pines. We then measured the differential expression of Scots pine genes in the respective mycorrhizas using oligoarrays.

Organism:

Pinus sylvestris; Cenococcum geophilum

Type:

Expression profiling by array

Platform:

GPL21757

14 Samples

Download data: PAIR

(Submitter supplied) Agaricomycetes produce the most efficient enzyme systems to degrade wood and the most complex morphological structures in the fungal kingdom. Despite decades-long interest in their genetic bases, the evolution and functional diversity of both wood-decay and fruiting body formation are incompletely known.Here, we perform comparative genomic and transcriptomic analyses of wood-decay and fruiting body development in Auriculariopsis ampla and Schizophyllum commune (Schizophyllaceae), species with secondarily simplified morphologies and enigmatic wood-decay strategy and weak pathogenicity to woody plants. more...

Organism:

Auriculariopsis ampla

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26790

15 Samples

Download data: CSV

(Submitter supplied) Quantitative disease resistance (QDR) is a form of plant immunity conserved across species able to limit infections caused by a broad range of pathogens. QDR has a complex genetic determinism, the bases of which are not fully understood. The number of genes contributing to the QDR response and the extent to which molecular components of the QDR response vary across plant species remain elusive. The fungal pathogen Sclerotinia sclerotiorum, causal agent of white mold disease on hundreds of plant species, triggers QDR responses in host populations. more...

Organism:

Beta vulgaris subsp. vulgaris; Phaseolus vulgaris; Ricinus communis; Helianthus annuus

Type:

Expression profiling by high throughput sequencing

4 related Platforms

24 Samples

Download data: TXT

(Submitter supplied) Cooperation is associated with major transitions in evolution such as the emergence of multicellularity. It is central to the evolution of many complex traits in nature, including growth and virulence in pathogenic bacteria. Whether cells of multicellular parasites function cooperatively during infection remains however largely unknown. Here, we show that hyphal cells of the fungal pathogen Sclerotinia sclerotiorum reprogram towards division of labor to facilitate the colonization of host plants. more...

Organism:

Sclerotinia sclerotiorum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL20037

15 Samples

Download data: TXT

(Submitter supplied) Plant pathogens with a broad host range are able to infect plant lineages that diverged over 100 million years ago. They exert similar and recurring constraints on the evolution of unrelated plant populations. Plants generally respond with quantitative disease resistance (QDR), a form of immunity relying on complex genetic determinants. In most cases, the molecular determinants of QDR and how they evolve is unknown. more...

Organism:

Arabidopsis thaliana; Solanum lycopersicum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL17639 GPL19694

12 Samples

Download data: TXT

(Submitter supplied) The Solexa/Illumina’s digital gene expression (DGE) system was used to gain insight into the broad range of transcriptional responses during the vegetative growth, sclerotial development, myceliogenic germination, carpogenic germination, apothecium formation (stipe) and infection of Sclerotinia sclerotiorum. We obtained a sequencing depth of approximately 3.3 million clean tags per cDNA library. Tag mapping indicated that these six cDNA libraries in total represented more than 66.7% of all of the genes presented in the predicted transcript databases of the Broad Institute. more...

Organism:

Sclerotinia sclerotiorum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL13429

6 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Tetranychus urticae

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL14176

26 Samples

Download data: TXT

(Submitter supplied) We generated 38-bp Illumina reads from messenger RNA libraries from mites transferred from their preferred laboratory host, bean (Phaseolus vulgaris cv. California Red Kidney), to one of three hosts: bean, Arabidopsis thaliana (Bla-2 accession) and the tomato (Solanum lycopersicum; genotype Heinz 1706). Larvae were carefully collected from bean plants and transferred to the treatment plant. Mites were reared on these plants for ~24 hours, after which mites were collected for mRNA library preparation. more...

Organism:

Tetranychus urticae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL14176

9 Samples

Download data: TXT

(Submitter supplied) We generated 38-bp Illumina reads from single messenger RNA libraries from three diverse developmental stages of the two-spotted spider mite to capture small RNA diversity across development. Adult, nymphal+larvae and embryonic stages were separated using sieves of various pore sizes, and mites of various developmental stages were carefully selected for small RNA library preparation. Samples were a mix of males and females to capture male and female patterns of small RNA composition and were reared on beans (Phaseolus vulgaris cv California Red Kidney). more...

Organism:

Tetranychus urticae

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL14176

3 Samples

Download data: TXT

(Submitter supplied) We generated 77-bp Illumina reads from single messenger RNA libraries from four diverse developmental stages of the two-spotted spider mite to maximally capture the complement of transcribed sequences across development. Adult, nymphal, larvae and embryonic stages were separated using sieves of various pore sizes, and mites of various developmental stages were carefully selected for transcriptome library preparation. more...

Organism:

Tetranychus urticae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL14176

8 Samples

Download data: TXT

(Submitter supplied) We sequenced messenger RNA from mixed stages of the two-spotted spider mite (Tetranychus urticae) reared on bean (Phaseolus vulgaris cv California Red Kidney; the laboratory host plant for mites) and two Arabidopsis thaliana accessions which were considered to either be susceptible (Kondara) or resistant (Bla-2) to mite feeding. This pilot experiment was conducted to assess gene expression differences of mites grown on sensitive versus resistant Arabidopsis accessions, as well as differences in mites feeding on different host species. more...

Organism:

Tetranychus urticae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL14176

6 Samples

Download data: TXT

(Submitter supplied) Utilising a whole genome array, we have investigated the differential expression of genes across different developmental stages in the life cycle of Agaricus bisporus.

Organism:

Agaricus bisporus var. bisporus H97

Type:

Expression profiling by array

Platform:

GPL15836

16 Samples

Download data: TXT

(Submitter supplied) The aim of this analysis was to analyze gene expression in young fruiting bodies (protoapothecia) of the filamentous ascomycete Ascodesmis nigricans. Young fruiting bodies were isolated by laser microdissection, RNA was extracted, amplified and used for RNA-sequencing. The resulting data were compared to data from total vegetative and sexual mycelium.

Organism:

Ascodesmis nigricans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22786

6 Samples

Download data: TXT