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Links from GEO DataSets

Items: 20

1.

RNA-seq from ENCODE/Caltech

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (mailto:[email protected] for data coordination/informatics/experimental questions, mailto:[email protected] for informatics questions, mailto:[email protected] for experimental questions). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:[email protected]). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL9052
24 Samples
Download data: BAI, BAM, BIGBED, BIGWIG, GTF, TXT
Series
Accession:
GSE33480
ID:
200033480

PubMed Full text in PMC Similar studies ENCODEAnalyze with GEO2RSRA Run Selector

2.

Targeted RT-PCR assays spanning unannotated splice junctions sequenced by Roche 454.

(Submitter supplied) The ENCODE projects seeks to identify and characterize functional elements in the human genome. Throughout the scale-up phase of ENCODE, the transcriptome group has generate Long RNA-Seq, Small RNA-Seq, Cap-Analysis of Gene Expression (CAGE), and RNA-PET short read data on the Illumina platform for ~ 40 different human primary and transformed cell lines in replicate. From these data several high-resolution and discrete features/elements have been mined out (5’ caps, splice junctions, polyadenylation sites, small RNAs, etc…). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL9186
3 Samples
Download data: PSL, TXT
Series
Accession:
GSE38886
ID:
200038886

PubMed Full text in PMC Similar studies ENCODEAnalyze with GEO2RSRA Run Selector

3.

RNA Subcellular CAGE Localization from ENCODE/RIKEN

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Piero Carninci mailto:[email protected]). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:[email protected]). This track shows 5' cap analysis gene expression (CAGE) tags and clusters in RNA extracts (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=rnaExtract) from different sub-cellular localizations (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=localization) in multiple cell lines (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=cellType). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL9052 GPL10999 GPL11154
78 Samples
Download data: BED, BEDRNAELEMENTS, BIGWIG, GTF, TXT
Series
Accession:
GSE34448
ID:
200034448

PubMed Full text in PMC Similar studies ENCODESRA Run Selector

4.

RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Yijun Ruan mailto:[email protected]). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:[email protected]). This track is produced as part of the ENCODE Transcriptome Project. It shows the starts and ends of full length mRNA transcripts determined by GIS paired-end ditag (PET) sequencing using RNA extracts (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=rnaExtract) from different sub-cellular localizations (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=localization) in different cell lines (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=cellType). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL11154 GPL9115 GPL10999
31 Samples
Download data: BED, BIGWIG
Series
Accession:
GSE33600
ID:
200033600

PubMed Full text in PMC Similar studies ENCODESRA Run Selector

5.

ENCODE Cold Spring Harbor Labs Long RNA-seq

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
4 related Platforms
84 Samples
Download data: BAM, BB, BEDRNAELEMENTS, BIGWIG, GFF, GTF, PDF
Series
Accession:
GSE26284
ID:
200026284

PubMed Full text in PMC Similar studies ENCODESRA Run Selector

6.

Small RNA-seq from ENCODE/Cold Spring Harbor Lab

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Jonathan Preall [email protected] (Generation 0 Data from Hannon Lab), Carrie Davis [email protected] (experimental), Alex Dobin [email protected] (computational), Wei Lin [email protected] (computational), Tom Gingeras [email protected] (primary investigator)). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:[email protected]). more...
Organism:
Homo sapiens
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10999 GPL11154 GPL9052
87 Samples
Download data: BAM, BEDRNAELEMENTS, BIGWIG, GTF, PDF, TXT
Series
Accession:
GSE24565
ID:
200024565

PubMed Full text in PMC Similar studies ENCODEAnalyze with GEO2RSRA Run Selector

7.

pooled clone sequencing from DNA cloning sample (ENCSR992PQH)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL19424
1 Sample
Download data: TSV, TXT
Series
Accession:
GSE266844
ID:
200266844

PubMed Full text in PMC Similar studies ENCODE

8.

pooled clone sequencing from DNA cloning sample (ENCSR915INT)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
5 Samples
Download data: TXT
Series
Accession:
GSE266843
ID:
200266843

PubMed Full text in PMC Similar studies ENCODE

9.

pooled clone sequencing from DNA cloning sample (ENCSR889TWE)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
5 Samples
Download data: TXT
Series
Accession:
GSE266842
ID:
200266842

PubMed Full text in PMC Similar studies ENCODE

10.

pooled clone sequencing from DNA cloning sample (ENCSR866ZYZ)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
1 Sample
Download data: TSV, TXT
Series
Accession:
GSE266841
ID:
200266841

PubMed Full text in PMC Similar studies ENCODE

11.

pooled clone sequencing from DNA cloning sample (ENCSR845WYW)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
5 Samples
Download data: TXT
Series
Accession:
GSE266840
ID:
200266840

PubMed Full text in PMC Similar studies ENCODE

12.

pooled clone sequencing from DNA cloning sample (ENCSR836ULU)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
5 Samples
Download data: TXT
Series
Accession:
GSE266839
ID:
200266839

PubMed Full text in PMC Similar studies ENCODE

13.

pooled clone sequencing from DNA cloning sample (ENCSR830AFA)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
5 Samples
Download data: TXT
Series
Accession:
GSE266838
ID:
200266838

PubMed Full text in PMC Similar studies ENCODE

14.

pooled clone sequencing from DNA cloning sample (ENCSR813IVZ)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
5 Samples
Download data: TXT
Series
Accession:
GSE266837
ID:
200266837

PubMed Full text in PMC Similar studies ENCODE

15.

pooled clone sequencing from DNA cloning sample (ENCSR798QUP)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
1 Sample
Download data: TSV, TXT
Series
Accession:
GSE266836
ID:
200266836

PubMed Full text in PMC Similar studies ENCODE

16.

pooled clone sequencing from DNA cloning sample (ENCSR798ALS)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
1 Sample
Download data: TSV, TXT
Series
Accession:
GSE266835
ID:
200266835

PubMed Full text in PMC Similar studies ENCODE

17.

pooled clone sequencing from DNA cloning sample (ENCSR772FAR)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
1 Sample
Download data: TSV, TXT
Series
Accession:
GSE266834
ID:
200266834

PubMed Full text in PMC Similar studies ENCODE

18.

pooled clone sequencing from DNA cloning sample (ENCSR744FBH)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
1 Sample
Download data: TSV, TXT
Series
Accession:
GSE266833
ID:
200266833

PubMed Full text in PMC Similar studies ENCODE

19.

pooled clone sequencing from DNA cloning sample (ENCSR738NIX)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL26526
5 Samples
Download data: TXT
Series
Accession:
GSE266832
ID:
200266832

PubMed Full text in PMC Similar studies ENCODE

20.

pooled clone sequencing from DNA cloning sample (ENCSR732JTP)

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
synthetic construct
Type:
Other
Platform:
GPL19424
4 Samples
Download data: TXT
Series
Accession:
GSE266831
ID:
200266831

PubMed Full text in PMC Similar studies ENCODE

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