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Links from GEO DataSets

Items: 9

1.

snf/swi mutants of S. cerevisiae.

(Submitter supplied) The Saccharomyces cerevisiae Snf/Swi complex has been previously demonstrated to control transcription and chromatin structure of particular genes in vivo and to remodel nucleosomes in vitro. We have performed whole-genome expression analysis, using DNA microarrays, to study mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. This analysis was performed on cells grown in both rich and minimal media. more...
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by array
Datasets:
GDS105 GDS106
Platforms:
GPL57 GPL67 GPL65
12 Samples
Download data
Series
Accession:
GSE21
ID:
200000021
2.
Full record GDS106

Snf/Swi mutants (384_F_v1.0)

Whole-genome expression analysis of mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. The Snf/Swi complex controls transcription and chromatin structure.
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by array, log ratio, 2 growth protocol, 2 strain sets
Platform:
GPL65
Series:
GSE21
8 Samples
Download data
3.
Full record GDS105

Snf/Swi mutants (v1_2.2)

Whole-genome expression analysis of mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. The Snf/Swi complex controls transcription and chromatin structure.
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by array, log ratio, 2 strain sets
Platform:
GPL67
Series:
GSE21
2 Samples
Download data
4.

Swi/Snf dynamics on stress responsive genes is governed by competitive bromodomain interactions.

(Submitter supplied) Acetylation of Snf2 regulates Swi/Snf recruitment during stress
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL17143 GPL13821
56 Samples
Download data: BW
Series
Accession:
GSE61210
ID:
200061210
5.

A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling

(Submitter supplied) The in vivo role of a novel domain in Swi2/Snf2 required for its function was investigated using microarray analysis.
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by array
Platform:
GPL739
4 Samples
Download data: GPR
Series
Accession:
GSE30675
ID:
200030675
6.

Expression data from yeast (wild type, rlm1 and swi3 mutants) exposed to Congo Red

(Submitter supplied) We did transcription profiling on the effect of rlm1 (MAPK Slt2 transcription factor) deletion and swi3 (component of SWI/SNF complex involved in chromatin remodeling) deletion in genes involved in cell wall stress (Congo Red) response.
Organism:
Schizosaccharomyces pombe; Saccharomyces cerevisiae
Type:
Expression profiling by array
Platform:
GPL2529
18 Samples
Download data: CEL
Series
Accession:
GSE31176
ID:
200031176
7.

In vitro transcription start sites (TSSs) determined by 5'-RACE

(Submitter supplied) We report the TSSs of transcripts derived from in vitro chromatin transcription
Organism:
Saccharomyces cerevisiae
Type:
Other
Platform:
GPL17143
4 Samples
Download data: TXT
Series
Accession:
GSE93669
ID:
200093669
8.

Stress-dependent dynamics of chromatin remodeling in yeast: Dual roles for SWI/SNF in heat shock stress response

(Submitter supplied) Total H4 and acetyl H4 IP, time course Total H4 and acetyl H4 occupancy, Snf2 occupancy, gene expression analysis Keywords: stress response, time course
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by array; Expression profiling by array
Platform:
GPL5076
167 Samples
Download data: GPR
Series
Accession:
GSE7665
ID:
200007665
9.

Chromatin Remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast

(Submitter supplied) The chromatin remodelers (CRs) SWI/SNF and RSC function in evicting promoter nucleosomes at highly expressed yeast genes, particularly those activated by transcription factor Gcn4. Ino80 remodeling complex (Ino80C) can establish nucleosome-depleted regions (NDRs) in reconstituted chromatin, and was implicated in removing histone variant H2A.Z from the -1 and +1 nucleosomes flanking NDRs; however, Ino80C’s function in transcriptional activation in vivo is not well understood. more...
Organism:
Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL23014
101 Samples
Download data: BW
Series
Accession:
GSE142273
ID:
200142273
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Supplemental Content

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