GEO DataSets

Whole-genome expression analysis of mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. The Snf/Swi complex controls transcription and chromatin structure.

Organism:

Saccharomyces cerevisiae

Type:

Expression profiling by array, log ratio, 2 strain sets

Platform:

GPL67

Series:

GSE21

2 Samples

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(Submitter supplied) The Saccharomyces cerevisiae Snf/Swi complex has been previously demonstrated to control transcription and chromatin structure of particular genes in vivo and to remodel nucleosomes in vitro. We have performed whole-genome expression analysis, using DNA microarrays, to study mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. This analysis was performed on cells grown in both rich and minimal media. more...

Organism:

Saccharomyces cerevisiae

Type:

Expression profiling by array

Datasets:

GDS105 GDS106

Platforms:

GPL57 GPL67 GPL65

12 Samples

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Whole-genome expression analysis of mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. The Snf/Swi complex controls transcription and chromatin structure.

Organism:

Saccharomyces cerevisiae

Type:

Expression profiling by array, log ratio, 2 growth protocol, 2 strain sets

Platform:

GPL65

Series:

GSE21

8 Samples

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(Submitter supplied) Acetylation of Snf2 regulates Swi/Snf recruitment during stress

Organism:

Saccharomyces cerevisiae

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL17143 GPL13821

56 Samples

Download data: BW

(Submitter supplied) The in vivo role of a novel domain in Swi2/Snf2 required for its function was investigated using microarray analysis.

Organism:

Saccharomyces cerevisiae

Type:

Expression profiling by array

Platform:

GPL739

4 Samples

Download data: GPR

(Submitter supplied) We did transcription profiling on the effect of rlm1 (MAPK Slt2 transcription factor) deletion and swi3 (component of SWI/SNF complex involved in chromatin remodeling) deletion in genes involved in cell wall stress (Congo Red) response.

Organism:

Schizosaccharomyces pombe; Saccharomyces cerevisiae

Type:

Expression profiling by array

Platform:

GPL2529

18 Samples

Download data: CEL

(Submitter supplied) We report the TSSs of transcripts derived from in vitro chromatin transcription

Organism:

Saccharomyces cerevisiae

Type:

Other

Platform:

GPL17143

4 Samples

Download data: TXT

(Submitter supplied) Total H4 and acetyl H4 IP, time course Total H4 and acetyl H4 occupancy, Snf2 occupancy, gene expression analysis Keywords: stress response, time course

Organism:

Saccharomyces cerevisiae

Type:

Genome binding/occupancy profiling by array; Expression profiling by array

Platform:

GPL5076

167 Samples

Download data: GPR

(Submitter supplied) The chromatin remodelers (CRs) SWI/SNF and RSC function in evicting promoter nucleosomes at highly expressed yeast genes, particularly those activated by transcription factor Gcn4. Ino80 remodeling complex (Ino80C) can establish nucleosome-depleted regions (NDRs) in reconstituted chromatin, and was implicated in removing histone variant H2A.Z from the -1 and +1 nucleosomes flanking NDRs; however, Ino80C’s function in transcriptional activation in vivo is not well understood. more...

Organism:

Saccharomyces cerevisiae

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL23014

101 Samples

Download data: BW