GEO DataSets

(Submitter supplied) To reveal the correlation between epigenomic diversity and genomic SNVs, we first identified SNPs between T4 with other eleven Trichinella species. In total, we obtained 5,395,250 common SNVs across the twelve Trichinella species.

Organism:

Trichinella britovi; Trichinella papuae; Trichinella zimbabwensis; Trichinella patagoniensis; Trichinella spiralis; Trichinella nativa; Trichinella sp. T6; Trichinella nelsoni; Trichinella pseudospiralis; Trichinella murrelli; Trichinella sp. T8; Trichinella sp. T9

Type:

Other

12 related Platforms

12 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Trichinella spiralis; Trichinella nativa; Trichinella sp. T8; Trichinella papuae; Trichinella zimbabwensis; Trichinella britovi; Trichinella sp. T9; Trichinella nelsoni; Trichinella pseudospiralis; Trichinella sp. T6; Trichinella murrelli; Trichinella patagoniensis

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other

24 related Platforms

84 Samples

Download data: TXT

(Submitter supplied) Trichinellosis of human and other mammals was caused through the ingestion of the parasite，Trichinella spiralis，contaminated meat. It is a typical zoonotic disease that affects more than 10 million people world-wide. Parasites of Trichinella genus are unique intracellular pathogens. Adult Trichinella parasites directly release newborn larvae which invade striated muscle cells and causes diseases. In this study, we profiled the global transcriptome in the three developmental stages of T. more...

Organism:

Trichinella spiralis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15773

3 Samples

Download data: TXT

(Submitter supplied) We present the first study to confirm the existence of DNA methylation in the parasitic nematode Trichinella spiralis, and we characterize the methylomes of the three life-cycle stages of this food-borne infectious human pathogen. We observe a drastic increase in DNA methylation during the transition from the new born to mature stage, and we further identify parasitism-related genes that show changes in DNA methylation status between life cycle stages. more...

Organism:

Trichinella spiralis

Type:

Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:

GPL15773 GPL15806

6 Samples

Download data: TXT