Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX566072: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318770' containing sample 'VET0224R'
4 ILLUMINA (Illumina HiSeq 2000) runs: 13.8M spots, 2.8G bases, 1.3Gb downloads

UUID: bec82664-4b63-4cba-945c-cab95311f94c

Design: Illumina sequencing of Staphylococcus aureus VET0224R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228609 • SRP042688 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0224R

SAMN02404101 • SRS626328 • All experiments • All runs

Organism: Staphylococcus aureus VET0224R

Library:

Name: Pond-318770

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 471531.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5CLG4

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55332

research_project: RP-513

root_sample_id: SM-4Q5OB

sample_id: SM-5CLG4

work_request: 39368

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-01 14:58:37.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 4 runs, 13.8M spots, 2.8G bases, 1.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR1326954	3,444,589	695.8M	339.9Mb	2014-06-03
SRR1340409	3,431,067	693.1M	340.6Mb	2014-06-05
SRR1342184	3,467,841	700.5M	340.8Mb	2014-06-05
SRR1346359	3,416,939	690.2M	336.3Mb	2014-06-06

ID:: 808889

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Sequence Read Archive

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