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SRX26087721: GSM8516517: C4-2 cells,lv-control 3; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 23.6M spots, 7.1G bases, 2.1Gb downloads

External Id: GSM8516517_r1
Submitted by: Jilin University
Study: Androgen receptor splicing variant 7 (ARv7) promotes DNA damage response in prostate cancer cells
show Abstracthide Abstract
In the treatment of patients with locally advanced prostate cancer (PCa), androgen deprivation therapy (ADT) significantly enhances the efficacy of radiotherapy by weakening the DNA damage response (DDR) pathway. Recently, several studies have suggested that androgen receptor splicing variants (ARvs) may mediate a compensatory DDR pathway when canonical androgen receptor (AR) signaling is inhibited, thus contributing to the resistance of some patients to this combinational treatment. However, the specific roles of certain ARvs as well as the detailed mechanism of how ARvs regulate the DDR are not well understood. Here, we demonstrated that AR splicing variant 7 (ARv7), which is the most abundant form of ARvs, significantly promotes the DDR of PCa cells under severe DNA damage independent of its parental AR by using the ionizing radiation (IR) and doxorubicin (Dox)-treated cell models. Mechanistically, ARv7 is sufficient to upregulate both the homologous recombination (HR) and the nonhomologous end joining (NHEJ) pathways by forming a positive regulatory loop with poly ADP-ribose polymerase 1 (PARP1). Moreover, the presence of ARv7 impairs the synergistic effect between AR antagonists and poly ADP-ribose polymerase (PARP) inhibitor, which has been recently shown to be a promising future treatment strategy for metastatic castration resistant prostate cancer (mCRPC). Combined, our data indicate that constitutively active ARv7 not only contributes to radioresistance after ADT, but may also serve as a potential predictive biomarker for assessing the efficacy of novel PARP inhibitor-based therapy in PCa. Overall design: C4-2 cells stably expressing ARv7 and 22Rv-1 cells with ARv7 depletion were generated by puromycin selection. Then total RNA was extracted to assess the differentially expressed genes after ARv7 levels changes.
Sample: C4-2 cells,lv-control 3
SAMN43772407 • SRS22654327 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM8516517
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were plated in 10-cm dishes at a density of 1.5 × 106 cells/dish in triplicate and incubated overnight for attachment. They were lysed with TRIzol Reagent according to the manufacturers' instructions. The lysates were sent to Personalbio (Shanghai, China) for cDNA library construction and sequencing by Illumina NovaSeq 6000 The lysates were sent to Personalbio (Shanghai, China) for cDNA library construction and sequencing by Illumina NovaSeq 6000. RNA-sequencing reads were first trimmed to remove poly(A) and unqualified reads with Cutadapt(v2.7).
Runs: 1 run, 23.6M spots, 7.1G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR3066905923,626,5697.1G2.1Gb2024-09-15

ID:
35202167

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