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SRX19060786: Whole-genome sequencing of Clostridioides difficile from rectal swabs and stool samples in an ICU setting
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 690M bases, 399.9Mb downloads

Design: Illumina library prep using Nextera DNA CD indices
Submitted by: Brigham and Women's Hospital
Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
PRJNA278886 • SRP056445 • All experiments • All runs
show Abstracthide Abstract
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.
Sample:
SAMN32781644 • SRS16476580 • All experiments • All runs
Organism: Clostridioides difficile
Library:
Name: 0000-0091-2145
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.2M spots, 690M bases, 399.9Mb
Run# of Spots# of BasesSizePublished
SRR231094081,246,488690M399.9Mb2023-01-18

ID:
26232250

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