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SRX2498509: Whole genome shotgun sequencing of Escherichia coli serovar O103 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 763,046 spots, 350.6M bases, 192.7Mb downloads

External Id: EXT00237758
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Joint Institute for Food Safety and Applied Nutrition
PRJNA342435 • SRP096898 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Escherichia coli as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.
Sample:
SAMN06159503 • SRS1925351 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli serovar O103 Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O103.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 763,046 spots, 350.6M bases, 192.7Mb
Run# of Spots# of BasesSizePublished
SRR5182409763,046350.6M192.7Mb2017-01-17

ID:
3622035

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