Whole genome shotgun sequencing of Escherichia coli serovar O409:H10 ... - SRA

SRX1994918: Whole genome shotgun sequencing of Escherichia coli serovar O409:H10 by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 1.4M spots, 373.5M bases, 179.5Mb downloads

External Id: EXT00205922

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA230969 • SRP058582 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.

Sample:

SAMN05468048 • SRS1597491 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: Escherichia coli serovar O409:H10 Nextera XT shotgun

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O409:H10.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	Bcl2fastq	2.1

Runs: 1 run, 1.4M spots, 373.5M bases, 179.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR3993866	1,357,671	373.5M	179.5Mb	2016-08-02

ID:: 2869273

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity