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ERX1095770: Illumina MiSeq paired end sequencing
1 ILLUMINA (Illumina MiSeq) run: 5.7M spots, 2.6G bases, 1.1Gb downloads

Design: Sequencing of the genome of the high bacterial cellulose producer Glucanoacetobacter xylinux ATCC53582
Submitted by: IMPERIAL COLLEGE LONDON
Study: This study determines the genome sequence and creates genetic engineering tools for the high bacterial cellulose producer Gluconacetobacter xylinus ATCC 53582
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Bacterial cellulose is a strong, highly pure form of cellulose that is used in a range of applications in industry, consumer goods and medicine. Gluconacetobacter hansenii ATCC 53582 is one of the highest reported bacterial cellulose producing strains and has been used as a model organism in numerous studies of bacterial cellulose production and studies aiming to increased cellulose productivity. Here we present a high-quality draft genome sequence for G. hansenii ATCC 53582 and find that in addition to the previously described cellulose synthase operon, ATCC 53582 contains two additional cellulose synthase operons and several previously undescribed genes associated with cellulose production. In parallel, we also develop optimized protocols and identify plasmid backbones suitable for transformation of ATCC 53582, albeit with low efficiencies. Together, these results provide important information for further studies into cellulose synthesis and for future studies aiming to genetically engineer G. hansenii ATCC 53582 for increased cellulose productivity.
Sample: Komagataeibacter xylinus ATCC 53582
SAMEA3539690 • ERS846839 • All experiments • All runs
Library:
Name: ATCC53582
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: gDNA was extracted using the DNeasy Blood and Tissue kit according to manufacturer's protocol.DNA was purified using Zymo Clean and Concentrator kit according to manufacturer's instructions, followed by purification by dialyzing 30µl of DNA on a 0.025µm filter for 1h. gDNA sequencing library was then prepared with the Illumina Nextera DNA Library Preparation Kit according to the manufacturer's protocol
Runs: 1 run, 5.7M spots, 2.6G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
ERR10167035,700,0122.6G1.1Gb2016-03-26

ID:
2385842

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