Links from Gene
Items: 1 to 20 of 1000
2.
rs1491539428 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- TT>-
[Show Flanks]
- Chromosome:
- 11:5675205
(GRCh38)
11:5696435
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5675204:TT:
- Gene:
- TRIM5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by cluster
- MAF:
-=0.055/204
(TWINSUK)
-=0.0698/269
(ALSPAC)
- HGVS:
3.
rs1491528573 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->GA
[Show Flanks]
- Chromosome:
- 11:5592932
(GRCh38)
11:5614163
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5592932:A:AGA
- Gene:
- TRIM5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
AGA=0./0
(
ALFA)
AG=0.000079/8
(GnomAD)
- HGVS:
4.
rs1491525050 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CTT
[Show Flanks]
- Chromosome:
- 11:5633147
(GRCh38)
11:5654378
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5633147:TT:TTCTT
- Gene:
- TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
TTCTT=0./0
(
ALFA)
TTC=0.000008/2
(TOPMED)
- HGVS:
6.
rs1491498839 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CACACACACACACACACACACACACACATATA,CACACACACACACACACACACACACATATA,CACACACACACACACACACACACATA,CACACACACACACACACACACATA,CACACACACACACACACACACATATA,CACACACACACACACACACATA,CACACACACACACACACACATATA,CACACACACACACACACATA,CACACACACACACACACATATA,CACACACACACACACACATATATA,CACACACACACACACACATATATATA,CACACACACACACACATA,CACACACACACACACATATA,CACACACACACACACATATATA,CACACACACACACACATATATATA,CACACACACACACATA,CACACACACACACATACACACACATATATATA,CACACACACACACATATA,CACACACACACACATATATA,CACACACACACACATATATATA,CACACACACACAGATATA,CACACACACACATA,CACACACACACATATA,CACACACACACATATATA,CACACACACACATATATATA,CACACACACACATATATATATA,CACACACACATA,CACACACACATATA,CACACACACATATATA,CACACACACATATATATA,CACACACACATATATATATA,CACACACACATATATATATATA,CACACACATA,CACACACATATA,CACACACATATATA,CACACACATATATATA,CACACACATATATATATA,CACACACATATATATATATATATATA,CACACATA,CACACATATA,CACACATATATA,CACACATATATATA,CACACATATATATATA,CACACATATATATATATATA,CACACATATATATATATATATA,CACACATATATATATATATATATA,CACACATATATATATATATATATATA,CACACATATATATATATATATATATATA,CACACATATATATATATATATATATATATA,CACATA,CACATATA,CACATATATA,CACATATATATA,CACATATATATATA,CACATATATATATATATA,CACATATATATATATATATA,CACATATATATATATATATATA,CACATATATATATATATATATATA,CACATATATATATATATATATATATA,CACATATATATATATATATATATATATA,CACATATATATATATATATATATATATATA,CACATATATATATATATATATATATATATATA,CACATATATATATATATATATATATATATATATA,CATA,CATATA,CATATATA,CATATATATA,CATATATATATATA,CATATATATATATATATA,CATATATATATATATATATA,CATATATATATATATATATATA,CATATATATATATATATATATATA,CATATATATATATATATATATATATA,CATATATATATATATATATATATATATA,CATATATATATATATATATATATATATATA,CATATATATATATATATATATATATATATATA,CATATATATATATATATATATATATATATATATA
[Show Flanks]
- Chromosome:
- 11:5634530
(GRCh38)
11:5655761
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5634530:A:ACACACACACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACACATACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACAGATATA,NC_000011.10:5634530:A:ACACACACACACATA,NC_000011.10:5634530:A:ACACACACACACATATA,NC_000011.10:5634530:A:ACACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACACATATATATATA,NC_000011.10:5634530:A:ACACACACACATA,NC_000011.10:5634530:A:ACACACACACATATA,NC_000011.10:5634530:A:ACACACACACATATATA,NC_000011.10:5634530:A:ACACACACACATATATATA,NC_000011.10:5634530:A:ACACACACACATATATATATA,NC_000011.10:5634530:A:ACACACACACATATATATATATA,NC_000011.10:5634530:A:ACACACACATA,NC_000011.10:5634530:A:ACACACACATATA,NC_000011.10:5634530:A:ACACACACATATATA,NC_000011.10:5634530:A:ACACACACATATATATA,NC_000011.10:5634530:A:ACACACACATATATATATA,NC_000011.10:5634530:A:ACACACACATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATA,NC_000011.10:5634530:A:ACACACATATA,NC_000011.10:5634530:A:ACACACATATATA,NC_000011.10:5634530:A:ACACACATATATATA,NC_000011.10:5634530:A:ACACACATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACACATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATA,NC_000011.10:5634530:A:ACACATATA,NC_000011.10:5634530:A:ACACATATATA,NC_000011.10:5634530:A:ACACATATATATA,NC_000011.10:5634530:A:ACACATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACACATATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATA,NC_000011.10:5634530:A:ACATATA,NC_000011.10:5634530:A:ACATATATA,NC_000011.10:5634530:A:ACATATATATA,NC_000011.10:5634530:A:ACATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATATATA,NC_000011.10:5634530:A:ACATATATATATATATATATATATATATATATATA
- Gene:
- TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ACACACACACACACACACACATATA=0./0
(
ALFA)
ACACATATATATAT=0.000004/1
(TOPMED)
- HGVS:
NC_000011.10:g.5634531AC[14]AT[2]A[1], NC_000011.10:g.5634531AC[13]AT[2]A[1], NC_000011.10:g.5634531AC[12]ATA[1], NC_000011.10:g.5634531AC[11]ATA[1], NC_000011.10:g.5634531AC[11]AT[2]A[1], NC_000011.10:g.5634531AC[10]ATA[1], NC_000011.10:g.5634531AC[10]AT[2]A[1], NC_000011.10:g.5634531AC[9]ATA[1], NC_000011.10:g.5634531AC[9]AT[2]A[1], NC_000011.10:g.5634531AC[9]AT[3]A[1], NC_000011.10:g.5634531AC[9]AT[4]A[1], NC_000011.10:g.5634531AC[8]ATA[1], NC_000011.10:g.5634531AC[8]AT[2]A[1], NC_000011.10:g.5634531AC[8]AT[3]A[1], NC_000011.10:g.5634531AC[8]AT[4]A[1], NC_000011.10:g.5634531AC[7]ATA[1], NC_000011.10:g.5634531AC[7]ATACACACACATATATATA[1], NC_000011.10:g.5634531AC[7]AT[2]A[1], NC_000011.10:g.5634531AC[7]AT[3]A[1], NC_000011.10:g.5634531AC[7]AT[4]A[1], NC_000011.10:g.5634531AC[6]AGATATA[1], NC_000011.10:g.5634531AC[6]ATA[1], NC_000011.10:g.5634531AC[6]AT[2]A[1], NC_000011.10:g.5634531AC[6]AT[3]A[1], NC_000011.10:g.5634531AC[6]AT[4]A[1], NC_000011.10:g.5634531AC[6]AT[5]A[1], NC_000011.10:g.5634531AC[5]ATA[1], NC_000011.10:g.5634531AC[5]AT[2]A[1], NC_000011.10:g.5634531AC[5]AT[3]A[1], NC_000011.10:g.5634531AC[5]AT[4]A[1], NC_000011.10:g.5634531AC[5]AT[5]A[1], NC_000011.10:g.5634531AC[5]AT[6]A[1], NC_000011.10:g.5634531AC[4]ATA[1], NC_000011.10:g.5634531AC[4]AT[2]A[1], NC_000011.10:g.5634531AC[4]AT[3]A[1], NC_000011.10:g.5634531AC[4]AT[4]A[1], NC_000011.10:g.5634531AC[4]AT[5]A[1], NC_000011.10:g.5634531AC[4]AT[9]A[1], NC_000011.10:g.5634531AC[3]ATA[1], NC_000011.10:g.5634531AC[3]AT[2]A[1], NC_000011.10:g.5634531AC[3]AT[3]A[1], NC_000011.10:g.5634531AC[3]AT[4]A[1], NC_000011.10:g.5634531AC[3]AT[5]A[1], NC_000011.10:g.5634531AC[3]AT[7]A[1], NC_000011.10:g.5634531AC[3]AT[8]A[1], NC_000011.10:g.5634531AC[3]AT[9]A[1], NC_000011.10:g.5634531AC[3]AT[10]A[1], NC_000011.10:g.5634531AC[3]AT[11]A[1], NC_000011.10:g.5634531AC[3]AT[12]A[1], NC_000011.10:g.5634531AC[2]ATA[1], NC_000011.10:g.5634531AC[2]AT[2]A[1], NC_000011.10:g.5634531AC[2]AT[3]A[1], NC_000011.10:g.5634531AC[2]AT[4]A[1], NC_000011.10:g.5634531AC[2]AT[5]A[1], NC_000011.10:g.5634531AC[2]AT[7]A[1], NC_000011.10:g.5634531AC[2]AT[8]A[1], NC_000011.10:g.5634531AC[2]AT[9]A[1], NC_000011.10:g.5634531AC[2]AT[10]A[1], NC_000011.10:g.5634531AC[2]AT[11]A[1], NC_000011.10:g.5634531AC[2]AT[12]A[1], NC_000011.10:g.5634531AC[2]AT[13]A[1], NC_000011.10:g.5634531AC[2]AT[14]A[1], NC_000011.10:g.5634531AC[2]AT[15]A[1], NC_000011.10:g.5634531_5634532insCATA, NC_000011.10:g.5634531_5634532insCATATA, NC_000011.10:g.5634531_5634532insCATATATA, NC_000011.10:g.5634531_5634532insCATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATATATA, NC_000011.10:g.5634531_5634532insCATATATATATATATATATATATATATATATATA, NC_000011.9:g.5655761AC[14]AT[2]A[1], NC_000011.9:g.5655761AC[13]AT[2]A[1], NC_000011.9:g.5655761AC[12]ATA[1], NC_000011.9:g.5655761AC[11]ATA[1], NC_000011.9:g.5655761AC[11]AT[2]A[1], NC_000011.9:g.5655761AC[10]ATA[1], NC_000011.9:g.5655761AC[10]AT[2]A[1], NC_000011.9:g.5655761AC[9]ATA[1], NC_000011.9:g.5655761AC[9]AT[2]A[1], NC_000011.9:g.5655761AC[9]AT[3]A[1], NC_000011.9:g.5655761AC[9]AT[4]A[1], NC_000011.9:g.5655761AC[8]ATA[1], NC_000011.9:g.5655761AC[8]AT[2]A[1], NC_000011.9:g.5655761AC[8]AT[3]A[1], NC_000011.9:g.5655761AC[8]AT[4]A[1], NC_000011.9:g.5655761AC[7]ATA[1], NC_000011.9:g.5655761AC[7]ATACACACACATATATATA[1], NC_000011.9:g.5655761AC[7]AT[2]A[1], NC_000011.9:g.5655761AC[7]AT[3]A[1], NC_000011.9:g.5655761AC[7]AT[4]A[1], NC_000011.9:g.5655761AC[6]AGATATA[1], NC_000011.9:g.5655761AC[6]ATA[1], NC_000011.9:g.5655761AC[6]AT[2]A[1], NC_000011.9:g.5655761AC[6]AT[3]A[1], NC_000011.9:g.5655761AC[6]AT[4]A[1], NC_000011.9:g.5655761AC[6]AT[5]A[1], NC_000011.9:g.5655761AC[5]ATA[1], NC_000011.9:g.5655761AC[5]AT[2]A[1], NC_000011.9:g.5655761AC[5]AT[3]A[1], NC_000011.9:g.5655761AC[5]AT[4]A[1], NC_000011.9:g.5655761AC[5]AT[5]A[1], NC_000011.9:g.5655761AC[5]AT[6]A[1], NC_000011.9:g.5655761AC[4]ATA[1], NC_000011.9:g.5655761AC[4]AT[2]A[1], NC_000011.9:g.5655761AC[4]AT[3]A[1], NC_000011.9:g.5655761AC[4]AT[4]A[1], NC_000011.9:g.5655761AC[4]AT[5]A[1], NC_000011.9:g.5655761AC[4]AT[9]A[1], NC_000011.9:g.5655761AC[3]ATA[1], NC_000011.9:g.5655761AC[3]AT[2]A[1], NC_000011.9:g.5655761AC[3]AT[3]A[1], NC_000011.9:g.5655761AC[3]AT[4]A[1], NC_000011.9:g.5655761AC[3]AT[5]A[1], NC_000011.9:g.5655761AC[3]AT[7]A[1], NC_000011.9:g.5655761AC[3]AT[8]A[1], NC_000011.9:g.5655761AC[3]AT[9]A[1], NC_000011.9:g.5655761AC[3]AT[10]A[1], NC_000011.9:g.5655761AC[3]AT[11]A[1], NC_000011.9:g.5655761AC[3]AT[12]A[1], NC_000011.9:g.5655761AC[2]ATA[1], NC_000011.9:g.5655761AC[2]AT[2]A[1], NC_000011.9:g.5655761AC[2]AT[3]A[1], NC_000011.9:g.5655761AC[2]AT[4]A[1], NC_000011.9:g.5655761AC[2]AT[5]A[1], NC_000011.9:g.5655761AC[2]AT[7]A[1], NC_000011.9:g.5655761AC[2]AT[8]A[1], NC_000011.9:g.5655761AC[2]AT[9]A[1], NC_000011.9:g.5655761AC[2]AT[10]A[1], NC_000011.9:g.5655761AC[2]AT[11]A[1], NC_000011.9:g.5655761AC[2]AT[12]A[1], NC_000011.9:g.5655761AC[2]AT[13]A[1], NC_000011.9:g.5655761AC[2]AT[14]A[1], NC_000011.9:g.5655761AC[2]AT[15]A[1], NC_000011.9:g.5655761_5655762insCATA, NC_000011.9:g.5655761_5655762insCATATA, NC_000011.9:g.5655761_5655762insCATATATA, NC_000011.9:g.5655761_5655762insCATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATATATA, NC_000011.9:g.5655761_5655762insCATATATATATATATATATATATATATATATATA
7.
rs1491463066 has merged into rs1305516695 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ATAT>-,AT,ATATAT,ATATATATATATATAT,ATATATATATATATATAT,ATATATATATATATATATAT
[Show Flanks]
- Chromosome:
- 11:5657604
(GRCh38)
11:5678834
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5657599:ATATATAT:ATAT,NC_000011.10:5657599:ATATATAT:ATATAT,NC_000011.10:5657599:ATATATAT:ATATATATAT,NC_000011.10:5657599:ATATATAT:ATATATATATATATATATAT,NC_000011.10:5657599:ATATATAT:ATATATATATATATATATATAT,NC_000011.10:5657599:ATATATAT:ATATATATATATATATATATATAT
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATATAT=0./0
(
ALFA)
ATATATATATATAT=0.000004/1
(TOPMED)
- HGVS:
NC_000011.10:g.5657600AT[2], NC_000011.10:g.5657600AT[3], NC_000011.10:g.5657600AT[5], NC_000011.10:g.5657600AT[10], NC_000011.10:g.5657600AT[11], NC_000011.10:g.5657600AT[12], NC_000011.9:g.5678830AT[2], NC_000011.9:g.5678830AT[3], NC_000011.9:g.5678830AT[5], NC_000011.9:g.5678830AT[10], NC_000011.9:g.5678830AT[11], NC_000011.9:g.5678830AT[12]
8.
rs1491453895 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AA>-
[Show Flanks]
- Chromosome:
- 11:5657707
(GRCh38)
11:5678937
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5657705:AAA:A
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0.000084/1
(
ALFA)
-=0.000033/4
(GnomAD)
- HGVS:
9.
rs1491445909 has merged into rs370297403 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AT>-,ATAT
[Show Flanks]
- Chromosome:
- 11:5675207
(GRCh38)
11:5696437
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5675205:TAT:T,NC_000011.10:5675205:TAT:TATAT
- Gene:
- TRIM5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.098959/1616
(
ALFA)
-=0.056945/255
(Estonian)
-=0.111667/67
(NorthernSweden)
-=0.128359/17872
(GnomAD)
-=0.15038/39804
(TOPMED)
-=0.229633/1150
(1000Genomes)
-=0.422818/7086
(TOMMO)
-=0.424672/778
(Korea1K)
- HGVS:
10.
rs1491431871 has merged into rs869222613 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CT>-,CTCT
[Show Flanks]
- Chromosome:
- 11:5613909
(GRCh38)
11:5635139
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5613907:TCT:T,NC_000011.10:5613907:TCT:TCTCT
- Gene:
- TRIM5 (Varview), TRIM6-TRIM34 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by cluster
- MAF:
-=0.0002/1
(GnomAD)
- HGVS:
11.
rs1491396605 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->G
[Show Flanks]
- Chromosome:
- 11:5604782
(GRCh38)
11:5626013
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5604782:GGGGG:GGGGGG
- Gene:
- TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
GGGGGG=0./0
(
ALFA)
G=0.000008/2
(TOPMED)
- HGVS:
12.
rs1491380755 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AA>-
[Show Flanks]
- Chromosome:
- 11:5657675
(GRCh38)
11:5678905
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5657674:AA:
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.00099/16
(TOMMO)
-=0.00297/5
(Korea1K)
-=0.01292/7
(NorthernSweden)
-=0.01298/65
(1000Genomes)
-=0.02762/2270
(GnomAD)
- HGVS:
13.
rs1491377402 has merged into rs35793386 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 11:5595732
(GRCh38)
11:5616962
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:5595720:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- TRIM5 (Varview), TRIM6 (Varview), TRIM6-TRIM34 (Varview)
- Functional Consequence:
- intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTT=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
TT=0.197324/118
(NorthernSweden)
- HGVS:
NC_000011.10:g.5595732_5595735del, NC_000011.10:g.5595733_5595735del, NC_000011.10:g.5595734_5595735del, NC_000011.10:g.5595735del, NC_000011.10:g.5595735dup, NC_000011.10:g.5595734_5595735dup, NC_000011.10:g.5595733_5595735dup, NC_000011.10:g.5595732_5595735dup, NC_000011.10:g.5595725_5595735dup, NC_000011.9:g.5616962_5616965del, NC_000011.9:g.5616963_5616965del, NC_000011.9:g.5616964_5616965del, NC_000011.9:g.5616965del, NC_000011.9:g.5616965dup, NC_000011.9:g.5616964_5616965dup, NC_000011.9:g.5616963_5616965dup, NC_000011.9:g.5616962_5616965dup, NC_000011.9:g.5616955_5616965dup
14.
rs1491365580 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AA>-
[Show Flanks]
- Chromosome:
- 11:5657697
(GRCh38)
11:5678927
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5657696:AA:
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
-=0.000008/1
(GnomAD)
- HGVS:
15.
rs1491357807 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AA>-
[Show Flanks]
- Chromosome:
- 11:5657599
(GRCh38)
11:5678829
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5657598:AA:
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.00021/4
(TOMMO)
-=0.00369/326
(GnomAD)
- HGVS:
16.
rs1491343105 has merged into rs34443439 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 11:5656367
(GRCh38)
11:5677597
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:5656355:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTT=0./0
(
ALFA)
-=0.2468/1236
(1000Genomes)
- HGVS:
NC_000011.10:g.5656367_5656371del, NC_000011.10:g.5656368_5656371del, NC_000011.10:g.5656369_5656371del, NC_000011.10:g.5656370_5656371del, NC_000011.10:g.5656371del, NC_000011.10:g.5656371dup, NC_000011.10:g.5656370_5656371dup, NC_000011.10:g.5656369_5656371dup, NC_000011.10:g.5656362_5656371dup, NC_000011.9:g.5677597_5677601del, NC_000011.9:g.5677598_5677601del, NC_000011.9:g.5677599_5677601del, NC_000011.9:g.5677600_5677601del, NC_000011.9:g.5677601del, NC_000011.9:g.5677601dup, NC_000011.9:g.5677600_5677601dup, NC_000011.9:g.5677599_5677601dup, NC_000011.9:g.5677592_5677601dup
17.
rs1491320474 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->TTATATATTATATATAATGCATTATATAT
[Show Flanks]
- Chromosome:
- 11:5657600
(GRCh38)
11:5678831
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5657600:TATATATTTATATATTATATATAATGCATTATATAT:TATATATTTATATATTATATATAATGCATTATATATTTATATATTATATATAATGCATTATATAT
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by cluster
- MAF:
TATATATTTATATATTATATATAATGCAT=0.00012/9
(GnomAD)
TATATATTTATATATTATATATAATGCAT=0.00202/33
(TOMMO)
- HGVS:
18.
rs1491292378 has merged into rs745849246 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT
[Show Flanks]
- Chromosome:
- 11:5643134
(GRCh38)
11:5664364
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:5643125:TTTTTTTTTTT:TTTTTTTTTTTTTTTTT
- Gene:
- TRIM34 (Varview), TRIM5 (Varview), TRIM6-TRIM34 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTT=0./0
(
ALFA)
TTTTTT=0.000004/1
(TOPMED)
-=0.159056/613
(ALSPAC)
-=0.169364/628
(TWINSUK)
- HGVS:
NC_000011.10:g.5643134_5643136del, NC_000011.10:g.5643135_5643136del, NC_000011.10:g.5643136del, NC_000011.10:g.5643136dup, NC_000011.10:g.5643135_5643136dup, NC_000011.10:g.5643134_5643136dup, NC_000011.10:g.5643133_5643136dup, NC_000011.10:g.5643132_5643136dup, NC_000011.10:g.5643131_5643136dup, NC_000011.9:g.5664364_5664366del, NC_000011.9:g.5664365_5664366del, NC_000011.9:g.5664366del, NC_000011.9:g.5664366dup, NC_000011.9:g.5664365_5664366dup, NC_000011.9:g.5664364_5664366dup, NC_000011.9:g.5664363_5664366dup, NC_000011.9:g.5664362_5664366dup, NC_000011.9:g.5664361_5664366dup
19.
rs1491287606 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->T
[Show Flanks]
- Chromosome:
- 11:5657697
(GRCh38)
11:5678928
(GRCh37)
- Canonical SPDI:
- NC_000011.10:5657697::T
- Gene:
- TRIM5 (Varview), LOC107984302 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000009/1
(GnomAD)
- HGVS: