SNP Links for Gene (Select 57633) - SNP

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Select item 14913642551.

rs1491364255 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: 3:3800140 (GRCh38)
3:3841825 (GRCh37)
Canonical SPDI:: NC_000003.12:3800140:A:ACA
Gene:: LRRN1 (Varview), LOC100130207 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: AC=0.0001/1 (GnomAD)
HGVS:: NC_000003.12:g.3800141_3800142insCA, NC_000003.11:g.3841825_3841826insCA

Select item 14912898802.

rs1491289880 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 3:3800139 (GRCh38)
3:3841823 (GRCh37)
Canonical SPDI:: NC_000003.12:3800138:CA:
Gene:: LRRN1 (Varview), LOC100130207 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000003.12:g.3800139_3800140del, NC_000003.11:g.3841823_3841824del

Select item 14912702503.

rs1491270250 has merged into rs5846290 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA [Show Flanks]
Chromosome:: 3:3800149 (GRCh38)
3:3841833 (GRCh37)
Canonical SPDI:: NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000003.12:3800139:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
Gene:: LRRN1 (Varview), LOC100130207 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.0642/24 (NorthernSweden)
-=0.0893/344 (ALSPAC)
-=0.2843/1424 (1000Genomes)
-=0.4/16 (GENOME_DK)
HGVS:: NC_000003.12:g.3800149_3800156del, NC_000003.12:g.3800152_3800156del, NC_000003.12:g.3800153_3800156del, NC_000003.12:g.3800154_3800156del, NC_000003.12:g.3800155_3800156del, NC_000003.12:g.3800156del, NC_000003.12:g.3800156dup, NC_000003.12:g.3800155_3800156dup, NC_000003.12:g.3800154_3800156dup, NC_000003.12:g.3800153_3800156dup, NC_000003.11:g.3841833_3841840del, NC_000003.11:g.3841836_3841840del, NC_000003.11:g.3841837_3841840del, NC_000003.11:g.3841838_3841840del, NC_000003.11:g.3841839_3841840del, NC_000003.11:g.3841840del, NC_000003.11:g.3841840dup, NC_000003.11:g.3841839_3841840dup, NC_000003.11:g.3841838_3841840dup, NC_000003.11:g.3841837_3841840dup

Select item 14910867244.

rs1491086724 has merged into rs35514612 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>-,C,CCC,CCCC,CCCCCC,CCCCCCC,CCCCCCCC [Show Flanks]
Chromosome:: 3:3837340 (GRCh38)
3:3879024 (GRCh37)
Canonical SPDI:: NC_000003.12:3837332:CCCCCCCCC:CCCCCCC,NC_000003.12:3837332:CCCCCCCCC:CCCCCCCC,NC_000003.12:3837332:CCCCCCCCC:CCCCCCCCCC,NC_000003.12:3837332:CCCCCCCCC:CCCCCCCCCCC,NC_000003.12:3837332:CCCCCCCCC:CCCCCCCCCCCCC,NC_000003.12:3837332:CCCCCCCCC:CCCCCCCCCCCCCC,NC_000003.12:3837332:CCCCCCCCC:CCCCCCCCCCCCCCC
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCCCC=0./0 (ALFA)
C=0.075/3 (GENOME_DK)
C=0.1133/68 (NorthernSweden)
C=0.1154/517 (Estonian)
C=0.1292/498 (ALSPAC)
C=0.1297/481 (TWINSUK)
C=0.1635/791 (1000Genomes)
HGVS:: NC_000003.12:g.3837340_3837341del, NC_000003.12:g.3837341del, NC_000003.12:g.3837341dup, NC_000003.12:g.3837340_3837341dup, NC_000003.12:g.3837338_3837341dup, NC_000003.12:g.3837337_3837341dup, NC_000003.12:g.3837336_3837341dup, NC_000003.11:g.3879024_3879025del, NC_000003.11:g.3879025del, NC_000003.11:g.3879025dup, NC_000003.11:g.3879024_3879025dup, NC_000003.11:g.3879022_3879025dup, NC_000003.11:g.3879021_3879025dup, NC_000003.11:g.3879020_3879025dup

Select item 14910090545.

rs1491009054 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 3:3812834 (GRCh38)
3:3854518 (GRCh37)
Canonical SPDI:: NC_000003.12:3812832:AGA:A
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.3812834_3812835del, NC_000003.11:g.3854518_3854519del

Select item 14909813806.

rs1490981380 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:3807734 (GRCh38)
3:3849418 (GRCh37)
Canonical SPDI:: NC_000003.12:3807733:A:G
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.3807734A>G, NC_000003.11:g.3849418A>G

Select item 14909154837.

rs1490915483 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:3842906 (GRCh38)
3:3884590 (GRCh37)
Canonical SPDI:: NC_000003.12:3842905:G:A
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.3842906G>A, NC_000003.11:g.3884590G>A

Select item 14909128178.

rs1490912817 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:3817936 (GRCh38)
3:3859620 (GRCh37)
Canonical SPDI:: NC_000003.12:3817935:A:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000462/7 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000064/9 (GnomAD)
C=0.001563/7 (Estonian)
HGVS:: NC_000003.12:g.3817936A>C, NC_000003.11:g.3859620A>C

Select item 14908406999.

rs1490840699 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>C
Chromosome:: no mapping
Canonical SPDI:

Select item 149077365510.

rs1490773655 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:3836023 (GRCh38)
3:3877707 (GRCh37)
Canonical SPDI:: NC_000003.12:3836022:A:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.3836023A>C, NC_000003.11:g.3877707A>C

Select item 149069710711.

rs1490697107 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:3835075 (GRCh38)
3:3876759 (GRCh37)
Canonical SPDI:: NC_000003.12:3835074:A:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.3835075A>C, NC_000003.11:g.3876759A>C

Select item 149065750012.

rs1490657500 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:3849982 (GRCh38)
3:3891666 (GRCh37)
Canonical SPDI:: NC_000003.12:3849981:G:A
Gene:: LRRN1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000003.12:g.3849982G>A, NC_000003.11:g.3891666G>A

Select item 149062213113.

rs1490622131 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:3829487 (GRCh38)
3:3871171 (GRCh37)
Canonical SPDI:: NC_000003.12:3829486:T:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.3829487T>C, NC_000003.11:g.3871171T>C

Select item 149054811614.

rs1490548116 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:3800321 (GRCh38)
3:3842005 (GRCh37)
Canonical SPDI:: NC_000003.12:3800320:T:G
Gene:: LRRN1 (Varview), LOC100130207 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.3800321T>G, NC_000003.11:g.3842005T>G

Select item 149049311115.

rs1490493111 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:3808176 (GRCh38)
3:3849860 (GRCh37)
Canonical SPDI:: NC_000003.12:3808175:A:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.3808176A>C, NC_000003.11:g.3849860A>C

Select item 149043661316.

rs1490436613 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:3807229 (GRCh38)
3:3848913 (GRCh37)
Canonical SPDI:: NC_000003.12:3807228:T:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.3807229T>C, NC_000003.11:g.3848913T>C

Select item 149042303817.

rs1490423038 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 3:3816957 (GRCh38)
3:3858641 (GRCh37)
Canonical SPDI:: NC_000003.12:3816956:TT:T
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.3816958del, NC_000003.11:g.3858642del

Select item 149026026618.

rs1490260266 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:3822785 (GRCh38)
3:3864469 (GRCh37)
Canonical SPDI:: NC_000003.12:3822784:G:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.3822785G>C, NC_000003.11:g.3864469G>C

Select item 149022049319.

rs1490220493 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 3:3835409 (GRCh38)
3:3877093 (GRCh37)
Canonical SPDI:: NC_000003.12:3835404:GTGTGT:GTGT
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.3835405GT[2], NC_000003.11:g.3877089GT[2]

Select item 149010956420.

rs1490109564 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:3828980 (GRCh38)
3:3870664 (GRCh37)
Canonical SPDI:: NC_000003.12:3828979:T:C
Gene:: LRRN1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000016/2 (GnomAD)
HGVS:: NC_000003.12:g.3828980T>C, NC_000003.11:g.3870664T>C

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