SNP Links for Gene (Select 400655) - SNP

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Select item 14915834361.

rs1491583436 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: 18:73203756 (GRCh38)
18:70870991 (GRCh37)
Canonical SPDI:: NC_000018.10:73203755:GG:
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000018.10:g.73203756_73203757del, NC_000018.9:g.70870991_70870992del

Select item 14915745612.

rs1491574561 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 18:73207375 (GRCh38)
18:70874610 (GRCh37)
Canonical SPDI:: NC_000018.10:73207373:ACA:A,NC_000018.10:73207373:ACA:ACACA
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACACA=0./0 (ALFA)
HGVS:: NC_000018.10:g.73207375_73207376del, NC_000018.10:g.73207375_73207376dup, NC_000018.9:g.70874610_70874611del, NC_000018.9:g.70874610_70874611dup

Select item 14915649793.

rs1491564979 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 18:73207005 (GRCh38)
18:70874240 (GRCh37)
Canonical SPDI:: NC_000018.10:73207001:ACACA:ACA,NC_000018.10:73207001:ACACA:ACACACA
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACA=0.00098/16 (ALFA)
HGVS:: NC_000018.10:g.73207003CA[1], NC_000018.10:g.73207003CA[3], NC_000018.9:g.70874238CA[1], NC_000018.9:g.70874238CA[3]

Select item 14915586224.

rs1491558622 has merged into rs1479324902 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT,ATATAT,ATATATAT,ATATGTTTTACACATATATGTTTTACACATATGTTTTACATATATATGTTTTACATATATATAT,ATATGTTTTACACATATGTTTTACATATATATGTTTTACATATATATAT [Show Flanks]
Chromosome:: 18:73207079 (GRCh38)
18:70874314 (GRCh37)
Canonical SPDI:: NC_000018.10:73207076:ATAT:AT,NC_000018.10:73207076:ATAT:ATATAT,NC_000018.10:73207076:ATAT:ATATATAT,NC_000018.10:73207076:ATAT:ATATATATAT,NC_000018.10:73207076:ATAT:ATATATGTTTTACACATATATGTTTTACACATATGTTTTACATATATATGTTTTACATATATATAT,NC_000018.10:73207076:ATAT:ATATATGTTTTACACATATGTTTTACATATATATGTTTTACATATATATAT
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATAT=0./0 (ALFA)
HGVS:: NC_000018.10:g.73207077AT[1], NC_000018.10:g.73207077AT[3], NC_000018.10:g.73207077AT[4], NC_000018.10:g.73207077AT[5], NC_000018.10:g.73207077_73207080ATATATGTTTTACAC[2]ATATGTTTTACATAT[2]AT[3], NC_000018.10:g.73207077_73207080AT[3]GTTTTACACATATGTTTTACATATATATGTTTTACATATATATAT[1], NC_000018.9:g.70874312AT[1], NC_000018.9:g.70874312AT[3], NC_000018.9:g.70874312AT[4], NC_000018.9:g.70874312AT[5], NC_000018.9:g.70874312_70874315ATATATGTTTTACAC[2]ATATGTTTTACATAT[2]AT[3], NC_000018.9:g.70874312_70874315AT[3]GTTTTACACATATGTTTTACATATATATGTTTTACATATATATAT[1]

Select item 14915541835.

rs1491554183 [Homo sapiens]

Variant type:: INS
Alleles:: ->TAC [Show Flanks]
Chromosome:: 18:73206986 (GRCh38)
18:70874222 (GRCh37)
Canonical SPDI:: NC_000018.10:73206986::TAC
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TAC=0.00008/1 (ALFA)
HGVS:: NC_000018.10:g.73206986_73206987insTAC, NC_000018.9:g.70874221_70874222insTAC

Select item 14915477746.

rs1491547774 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 18:73207437 (GRCh38)
18:70874672 (GRCh37)
Canonical SPDI:: NC_000018.10:73207436:TA:
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.02226/264 (ALFA)
-=0.00096/28 (GnomAD)
-=0.01651/224 (TOMMO)
HGVS:: NC_000018.10:g.73207437_73207438del, NC_000018.9:g.70874672_70874673del

Select item 14915445497.

rs1491544549 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 18:73264585 (GRCh38)
18:70931820 (GRCh37)
Canonical SPDI:: NC_000018.10:73264584:CA:
Gene:: LINC02864 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00034/4 (ALFA)
HGVS:: NC_000018.10:g.73264585_73264586del, NC_000018.9:g.70931820_70931821del

Select item 14915392238.

rs1491539223 has merged into rs1266303425 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 18:73207503 (GRCh38)
18:70874738 (GRCh37)
Canonical SPDI:: NC_000018.10:73207499:ACACA:ACA,NC_000018.10:73207499:ACACA:ACACACA
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACA=0./0 (ALFA)
-=0.0007/10 (TOMMO)
-=0.00085/51 (GnomAD)
HGVS:: NC_000018.10:g.73207501CA[1], NC_000018.10:g.73207501CA[3], NC_000018.9:g.70874736CA[1], NC_000018.9:g.70874736CA[3]

Select item 14915369589.

rs1491536958 has merged into rs376307522 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACACACACACACACACACAC>-,AC,ACAC,ACACAC,ACACACAC,ACACACACAC,ACACACACACAC,ACACACACACACAC,ACACACACACACACAC,ACACACACACACACACAC,ACACACACACACACACACACAC,ACACACACACACACACACACACAC,ACACACACACACACACACACACACAC,ACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACAC [Show Flanks]
Chromosome:: 18:73206240 (GRCh38)
18:70873475 (GRCh37)
Canonical SPDI:: NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACACACACACACACAC,NC_000018.10:73206219:ACACACACACACACACACACACACACACACACACACACAC:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACACACAC=0./0 (ALFA)
AC=0.4598/1772 (ALSPAC)
AC=0.4622/1714 (TWINSUK)
HGVS:: NC_000018.10:g.73206220AC[10], NC_000018.10:g.73206220AC[11], NC_000018.10:g.73206220AC[12], NC_000018.10:g.73206220AC[13], NC_000018.10:g.73206220AC[14], NC_000018.10:g.73206220AC[15], NC_000018.10:g.73206220AC[16], NC_000018.10:g.73206220AC[17], NC_000018.10:g.73206220AC[18], NC_000018.10:g.73206220AC[19], NC_000018.10:g.73206220AC[21], NC_000018.10:g.73206220AC[22], NC_000018.10:g.73206220AC[23], NC_000018.10:g.73206220AC[24], NC_000018.10:g.73206220AC[25], NC_000018.10:g.73206220AC[26], NC_000018.10:g.73206220AC[27], NC_000018.10:g.73206220AC[28], NC_000018.10:g.73206220AC[29], NC_000018.9:g.70873455AC[10], NC_000018.9:g.70873455AC[11], NC_000018.9:g.70873455AC[12], NC_000018.9:g.70873455AC[13], NC_000018.9:g.70873455AC[14], NC_000018.9:g.70873455AC[15], NC_000018.9:g.70873455AC[16], NC_000018.9:g.70873455AC[17], NC_000018.9:g.70873455AC[18], NC_000018.9:g.70873455AC[19], NC_000018.9:g.70873455AC[21], NC_000018.9:g.70873455AC[22], NC_000018.9:g.70873455AC[23], NC_000018.9:g.70873455AC[24], NC_000018.9:g.70873455AC[25], NC_000018.9:g.70873455AC[26], NC_000018.9:g.70873455AC[27], NC_000018.9:g.70873455AC[28], NC_000018.9:g.70873455AC[29]

Select item 149153580510.

rs1491535805 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 18:73207326 (GRCh38)
18:70874561 (GRCh37)
Canonical SPDI:: NC_000018.10:73207324:ACA:A,NC_000018.10:73207324:ACA:ACACA
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACACA=0./0 (ALFA)
HGVS:: NC_000018.10:g.73207326_73207327del, NC_000018.10:g.73207326_73207327dup, NC_000018.9:g.70874561_70874562del, NC_000018.9:g.70874561_70874562dup

Select item 149151947611.

rs1491519476 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 18:73207341 (GRCh38)
18:70874576 (GRCh37)
Canonical SPDI:: NC_000018.10:73207340:TA:
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000018.10:g.73207341_73207342del, NC_000018.9:g.70874576_70874577del

Select item 149151489312.

rs1491514893 has merged into rs1555726365 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 18:73207602 (GRCh38)
18:70874837 (GRCh37)
Canonical SPDI:: NC_000018.10:73207597:CACACA:CACA,NC_000018.10:73207597:CACACA:CACACACA
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACA=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000018.10:g.73207598CA[2], NC_000018.10:g.73207598CA[4], NC_000018.9:g.70874833CA[2], NC_000018.9:g.70874833CA[4]

Select item 149149282313.

rs1491492823 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT,GTATGT [Show Flanks]
Chromosome:: 18:73207049 (GRCh38)
18:70874285 (GRCh37)
Canonical SPDI:: NC_000018.10:73207049:T:TGT,NC_000018.10:73207049:T:TGTATGT
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGTATGT=0./0 (ALFA)
HGVS:: NC_000018.10:g.73207050_73207051insGT, NC_000018.10:g.73207050_73207051insGTATGT, NC_000018.9:g.70874285_70874286insGT, NC_000018.9:g.70874285_70874286insGTATGT

Select item 149148170014.

rs1491481700 has merged into rs749400046 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT,ATATAT,ATATGTTTTACACATATAT,ATATGTTTTACACATATATGTTTTACACATATAT,ATATGTTTTACACATATGTTTTACACATATAT,ATATGTTTTACATATAT [Show Flanks]
Chromosome:: 18:73207051 (GRCh38)
18:70874286 (GRCh37)
Canonical SPDI:: NC_000018.10:73207048:ATAT:AT,NC_000018.10:73207048:ATAT:ATATAT,NC_000018.10:73207048:ATAT:ATATATAT,NC_000018.10:73207048:ATAT:ATATATGTTTTACACATATAT,NC_000018.10:73207048:ATAT:ATATATGTTTTACACATATATGTTTTACACATATAT,NC_000018.10:73207048:ATAT:ATATATGTTTTACACATATGTTTTACACATATAT,NC_000018.10:73207048:ATAT:ATATATGTTTTACATATAT
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATAT=0./0 (ALFA)
HGVS:: NC_000018.10:g.73207049AT[1], NC_000018.10:g.73207049AT[3], NC_000018.10:g.73207049AT[4], NC_000018.10:g.73207049_73207052AT[3]GTTTTACACATATAT[1], NC_000018.10:g.73207049_73207052ATATATGTTTTACAC[2]AT[3], NC_000018.10:g.73207049_73207052AT[3]GTTTTACACATAT[2]AT[1], NC_000018.10:g.73207049_73207052AT[3]GTTTTACATATAT[1], NC_000018.9:g.70874284AT[1], NC_000018.9:g.70874284AT[3], NC_000018.9:g.70874284AT[4], NC_000018.9:g.70874284_70874287AT[3]GTTTTACACATATAT[1], NC_000018.9:g.70874284_70874287ATATATGTTTTACAC[2]AT[3], NC_000018.9:g.70874284_70874287AT[3]GTTTTACACATAT[2]AT[1], NC_000018.9:g.70874284_70874287AT[3]GTTTTACATATAT[1]

Select item 149147333615.

rs1491473336 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 18:73207469 (GRCh38)
18:70874704 (GRCh37)
Canonical SPDI:: NC_000018.10:73207468:TA:
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00024/19 (GnomAD)
-=0.01901/312 (TOMMO)
HGVS:: NC_000018.10:g.73207469_73207470del, NC_000018.9:g.70874704_70874705del

Select item 149146709416.

rs1491467094 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 18:73162410 (GRCh38)
18:70829646 (GRCh37)
Canonical SPDI:: NC_000018.10:73162410::T
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000018.10:g.73162410_73162411insT, NC_000018.9:g.70829645_70829646insT

Select item 149145469017.

rs1491454690 has merged into rs1175440717 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 18:73207033 (GRCh38)
18:70874268 (GRCh37)
Canonical SPDI:: NC_000018.10:73207029:ACACA:ACA,NC_000018.10:73207029:ACACA:ACACACA
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACA=0./0 (ALFA)
HGVS:: NC_000018.10:g.73207031CA[1], NC_000018.10:g.73207031CA[3], NC_000018.9:g.70874266CA[1], NC_000018.9:g.70874266CA[3]

Select item 149145350818.

rs1491453508 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 18:73203757 (GRCh38)
18:70870992 (GRCh37)
Canonical SPDI:: NC_000018.10:73203756:GT:
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000027/3 (GnomAD)
HGVS:: NC_000018.10:g.73203757_73203758del, NC_000018.9:g.70870992_70870993del

Select item 149144010519.

rs1491440105 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 18:73207499 (GRCh38)
18:70874734 (GRCh37)
Canonical SPDI:: NC_000018.10:73207498:TA:
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00051/6 (ALFA)
-=0.00159/140 (GnomAD)
-=0.00374/58 (TOMMO)
-=0.00891/15 (Korea1K)
HGVS:: NC_000018.10:g.73207499_73207500del, NC_000018.9:g.70874734_70874735del

Select item 149143125920.

rs1491431259 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 18:73207373 (GRCh38)
18:70874608 (GRCh37)
Canonical SPDI:: NC_000018.10:73207372:TA:
Gene:: LINC02864 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00767/91 (ALFA)
-=0.00003/2 (GnomAD)
-=0.00022/4 (TOMMO)
HGVS:: NC_000018.10:g.73207373_73207374del, NC_000018.9:g.70874608_70874609del

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