SNP Links for Gene (Select 339894) - SNP

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Select item 14914092591.

rs1491409259 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,ATA,ATATA,ATATATA,ATATATATA,ATATATATATA,ATATATATATATA,ATATATATATATATA,ATATATATATATATATA,ATATATATATATATATATA,ATATATATATATATATATATA,ATATATATATATATATATATATA,ATATATATATATATATATATATATA,ATATATATATATATATATATATATATATA,ATATATATATATATATATATATATATATATA [Show Flanks]
Chromosome:: 3:157118660 (GRCh38)
3:156836450 (GRCh37)
Canonical SPDI:: NC_000003.12:157118660::A,NC_000003.12:157118660::ATA,NC_000003.12:157118660::ATATA,NC_000003.12:157118660::ATATATA,NC_000003.12:157118660::ATATATATA,NC_000003.12:157118660::ATATATATATA,NC_000003.12:157118660::ATATATATATATA,NC_000003.12:157118660::ATATATATATATATA,NC_000003.12:157118660::ATATATATATATATATA,NC_000003.12:157118660::ATATATATATATATATATA,NC_000003.12:157118660::ATATATATATATATATATATA,NC_000003.12:157118660::ATATATATATATATATATATATA,NC_000003.12:157118660::ATATATATATATATATATATATATA,NC_000003.12:157118660::ATATATATATATATATATATATATATATA,NC_000003.12:157118660::ATATATATATATATATATATATATATATATA
Gene:: LINC00880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATA=0./0 (ALFA)
HGVS:: NC_000003.12:g.157118660_157118661insA, NC_000003.12:g.157118660_157118661insATA, NC_000003.12:g.157118660_157118661insATATA, NC_000003.12:g.157118660_157118661insATATATA, NC_000003.12:g.157118660_157118661insATATATATA, NC_000003.12:g.157118660_157118661insATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATATATATATATATATA, NC_000003.12:g.157118660_157118661insATATATATATATATATATATATATATATATA, NC_000003.11:g.156836449_156836450insA, NC_000003.11:g.156836449_156836450insATA, NC_000003.11:g.156836449_156836450insATATA, NC_000003.11:g.156836449_156836450insATATATA, NC_000003.11:g.156836449_156836450insATATATATA, NC_000003.11:g.156836449_156836450insATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATATATATATATATATA, NC_000003.11:g.156836449_156836450insATATATATATATATATATATATATATATATA

Select item 14914086532.

rs1491408653 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 3:157085092 (GRCh38)
3:156802881 (GRCh37)
Canonical SPDI:: NC_000003.12:157085091:CA:
Gene:: LINC00880 (Varview), LINC02029 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000051/6 (GnomAD)
HGVS:: NC_000003.12:g.157085092_157085093del, NC_000003.11:g.156802881_156802882del

Select item 14914071353.

rs1491407135 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 3:157095883 (GRCh38)
3:156813673 (GRCh37)
Canonical SPDI:: NC_000003.12:157095883:A:AA
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000003.12:g.157095884dup, NC_000003.11:g.156813673dup

Select item 14912005874.

rs1491200587 has merged into rs869062873 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 3:157118664 (GRCh38)
3:156836453 (GRCh37)
Canonical SPDI:: NC_000003.12:157118659:TTTTTTTTTTTTT:TTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000003.12:157118659:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT
Gene:: LINC00880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.037415/22 (NorthernSweden)
HGVS:: NC_000003.12:g.157118664_157118672del, NC_000003.12:g.157118665_157118672del, NC_000003.12:g.157118666_157118672del, NC_000003.12:g.157118667_157118672del, NC_000003.12:g.157118668_157118672del, NC_000003.12:g.157118669_157118672del, NC_000003.12:g.157118670_157118672del, NC_000003.12:g.157118671_157118672del, NC_000003.12:g.157118672del, NC_000003.12:g.157118672dup, NC_000003.12:g.157118671_157118672dup, NC_000003.12:g.157118670_157118672dup, NC_000003.12:g.157118669_157118672dup, NC_000003.12:g.157118668_157118672dup, NC_000003.11:g.156836453_156836461del, NC_000003.11:g.156836454_156836461del, NC_000003.11:g.156836455_156836461del, NC_000003.11:g.156836456_156836461del, NC_000003.11:g.156836457_156836461del, NC_000003.11:g.156836458_156836461del, NC_000003.11:g.156836459_156836461del, NC_000003.11:g.156836460_156836461del, NC_000003.11:g.156836461del, NC_000003.11:g.156836461dup, NC_000003.11:g.156836460_156836461dup, NC_000003.11:g.156836459_156836461dup, NC_000003.11:g.156836458_156836461dup, NC_000003.11:g.156836457_156836461dup

Select item 14910749825.

rs1491074982 has merged into rs141674306 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTGTGT>-,GT,GTGT,GTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGT [Show Flanks]
Chromosome:: 3:157087713 (GRCh38)
3:156805502 (GRCh37)
Canonical SPDI:: NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000003.12:157087700:GTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Gene:: LINC00880 (Varview), LINC02029 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGTGTGTGTGT=0./0 (ALFA)
-=0.000023/6 (TOPMED)
GT=0.025/1 (GENOME_DK)
GT=0.085/51 (NorthernSweden)
-=0.254098/31 (1000Genomes)
HGVS:: NC_000003.12:g.157087701GT[6], NC_000003.12:g.157087701GT[7], NC_000003.12:g.157087701GT[8], NC_000003.12:g.157087701GT[9], NC_000003.12:g.157087701GT[11], NC_000003.12:g.157087701GT[12], NC_000003.12:g.157087701GT[13], NC_000003.12:g.157087701GT[14], NC_000003.12:g.157087701GT[15], NC_000003.12:g.157087701GT[16], NC_000003.11:g.156805490GT[6], NC_000003.11:g.156805490GT[7], NC_000003.11:g.156805490GT[8], NC_000003.11:g.156805490GT[9], NC_000003.11:g.156805490GT[11], NC_000003.11:g.156805490GT[12], NC_000003.11:g.156805490GT[13], NC_000003.11:g.156805490GT[14], NC_000003.11:g.156805490GT[15], NC_000003.11:g.156805490GT[16]

Select item 14909400786.

rs1490940078 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:157115502 (GRCh38)
3:156833291 (GRCh37)
Canonical SPDI:: NC_000003.12:157115501:T:C
Gene:: LINC00880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.157115502T>C, NC_000003.11:g.156833291T>C

Select item 14908234787.

rs1490823478 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:157107750 (GRCh38)
3:156825539 (GRCh37)
Canonical SPDI:: NC_000003.12:157107749:A:G
Gene:: LINC00880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157107750A>G, NC_000003.11:g.156825539A>G

Select item 14907392558.

rs1490739255 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157090511 (GRCh38)
3:156808300 (GRCh37)
Canonical SPDI:: NC_000003.12:157090510:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.157090511G>A, NC_000003.11:g.156808300G>A

Select item 14907138079.

rs1490713807 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:157091640 (GRCh38)
3:156809429 (GRCh37)
Canonical SPDI:: NC_000003.12:157091639:G:T
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157091640G>T, NC_000003.11:g.156809429G>T

Select item 149059763310.

rs1490597633 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157097292 (GRCh38)
3:156815081 (GRCh37)
Canonical SPDI:: NC_000003.12:157097291:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.157097292G>A, NC_000003.11:g.156815081G>A

Select item 149056617611.

rs1490566176 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:157122985 (GRCh38)
3:156840774 (GRCh37)
Canonical SPDI:: NC_000003.12:157122984:A:G
Gene:: LINC00880 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157122985A>G, NC_000003.11:g.156840774A>G, NR_034007.1:n.18T>C

Select item 149049453012.

rs1490494530 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:157118676 (GRCh38)
3:156836465 (GRCh37)
Canonical SPDI:: NC_000003.12:157118675:T:C
Gene:: LINC00880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000245/4 (ALFA)
C=0.00031/41 (GnomAD)
C=0.000446/2 (Estonian)
HGVS:: NC_000003.12:g.157118676T>C, NC_000003.11:g.156836465T>C

Select item 149046226513.

rs1490462265 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:157098865 (GRCh38)
3:156816654 (GRCh37)
Canonical SPDI:: NC_000003.12:157098864:A:C
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157098865A>C, NC_000003.11:g.156816654A>C

Select item 149024761114.

rs1490247611 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 3:157124238 (GRCh38)
3:156842027 (GRCh37)
Canonical SPDI:: NC_000003.12:157124237:T:C,NC_000003.12:157124237:T:G
Gene:: LINC00880 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
C=0.000106/2 (TOMMO)
HGVS:: NC_000003.12:g.157124238T>C, NC_000003.12:g.157124238T>G, NC_000003.11:g.156842027T>C, NC_000003.11:g.156842027T>G

Select item 149012708015.

rs1490127080 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:157085314 (GRCh38)
3:156803103 (GRCh37)
Canonical SPDI:: NC_000003.12:157085313:C:T
Gene:: LINC00880 (Varview), LINC02029 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157085314C>T, NC_000003.11:g.156803103C>T

Select item 148998543916.

rs1489985439 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:157115247 (GRCh38)
3:156833036 (GRCh37)
Canonical SPDI:: NC_000003.12:157115246:T:C
Gene:: LINC00880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000003.12:g.157115247T>C, NC_000003.11:g.156833036T>C

Select item 148997007317.

rs1489970073 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:157099488 (GRCh38)
3:156817277 (GRCh37)
Canonical SPDI:: NC_000003.12:157099487:A:G
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000071/1 (TOMMO)
HGVS:: NC_000003.12:g.157099488A>G, NC_000003.11:g.156817277A>G, NR_034008.1:n.248A>G

Select item 148994677418.

rs1489946774 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:157124898 (GRCh38)
3:156842687 (GRCh37)
Canonical SPDI:: NC_000003.12:157124897:A:T
Gene:: LINC00880 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.157124898A>T, NC_000003.11:g.156842687A>T

Select item 148994418319.

rs1489944183 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:157100507 (GRCh38)
3:156818296 (GRCh37)
Canonical SPDI:: NC_000003.12:157100506:G:A,NC_000003.12:157100506:G:C
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157100507G>A, NC_000003.12:g.157100507G>C, NC_000003.11:g.156818296G>A, NC_000003.11:g.156818296G>C

Select item 148988859320.

rs1489888593 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:157112794 (GRCh38)
3:156830583 (GRCh37)
Canonical SPDI:: NC_000003.12:157112793:T:C
Gene:: LINC00880 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157112794T>C, NC_000003.11:g.156830583T>C

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