SNP Links for Gene (Select 317772) - SNP

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Links from Gene

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Select item 14907439221.

rs1490743922 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:149889870 (GRCh38)
1:149861420 (GRCh37)
Canonical SPDI:: NC_000001.11:149889869:G:T
Gene:: H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149889870G>T, NW_003871055.3:g.6705283G>T, NC_000001.10:g.149861420G>T

Select item 14905789382.

rs1490578938 [Homo sapiens]

Variant type:: INS
Alleles:: ->GCGG [Show Flanks]
Chromosome:: 1:149889455 (GRCh38)
1:149861006 (GRCh37)
Canonical SPDI:: NC_000001.11:149889455::GCGG
Gene:: H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGG=0./0 (ALFA)
GCGG=0.000004/1 (TOPMED)
GCGG=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149889455_149889456insGCGG, NW_003871055.3:g.6704868_6704869insGCGG, NC_000001.10:g.149861005_149861006insGCGG

Select item 14897565543.

rs1489756554 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:149888124 (GRCh38)
1:149859674 (GRCh37)
Canonical SPDI:: NC_000001.11:149888123:G:C
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.149888124G>C, NW_003871055.3:g.6703537G>C, NC_000001.10:g.149859674G>C

Select item 14865916704.

rs1486591670 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:149887138 (GRCh38)
1:149858688 (GRCh37)
Canonical SPDI:: NC_000001.11:149887137:T:C,NC_000001.11:149887137:T:G
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,coding_sequence_variant,downstream_transcript_variant,2KB_upstream_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000043/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
G=0.001652/3 (Korea1K)
HGVS:: NC_000001.11:g.149887138T>C, NC_000001.11:g.149887138T>G, NW_003871055.3:g.6702551T>C, NW_003871055.3:g.6702551T>G, NC_000001.10:g.149858688T>C, NC_000001.10:g.149858688T>G, NM_003517.3:c.164T>C, NM_003517.3:c.164T>G, NM_003517.2:c.164T>C, NM_003517.2:c.164T>G, NP_003508.1:p.Val55Ala, NP_003508.1:p.Val55Gly

Select item 14858335905.

rs1485833590 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149887461 (GRCh38)
1:149859011 (GRCh37)
Canonical SPDI:: NC_000001.11:149887460:T:C
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.149887461T>C, NW_003871055.3:g.6702874T>C, NC_000001.10:g.149859011T>C

Select item 14856841616.

rs1485684161 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149887506 (GRCh38)
1:149859056 (GRCh37)
Canonical SPDI:: NC_000001.11:149887505:T:C
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,3_prime_UTR_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.149887506T>C, NW_003871055.3:g.6702919T>C, NC_000001.10:g.149859056T>C, NM_175065.3:c.*18A>G, NM_175065.2:c.*18A>G

Select item 14856152357.

rs1485615235 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149887454 (GRCh38)
1:149859004 (GRCh37)
Canonical SPDI:: NC_000001.11:149887453:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149887454C>T, NW_003871055.3:g.6702867C>T, NC_000001.10:g.149859004C>T

Select item 14851454188.

rs1485145418 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149888283 (GRCh38)
1:149859833 (GRCh37)
Canonical SPDI:: NC_000001.11:149888282:C:T
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149888283C>T, NW_003871055.3:g.6703696C>T, NC_000001.10:g.149859833C>T

Select item 14848146939.

rs1484814693 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149887850 (GRCh38)
1:149859400 (GRCh37)
Canonical SPDI:: NC_000001.11:149887849:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,coding_sequence_variant,downstream_transcript_variant,2KB_upstream_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.149887850C>T, NW_003871055.3:g.6703263C>T, NC_000001.10:g.149859400C>T, NM_175065.3:c.67G>A, NM_175065.2:c.67G>A, NP_778235.1:p.Gly23Ser

Select item 148416328810.

rs1484163288 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:149888639 (GRCh38)
1:149860189 (GRCh37)
Canonical SPDI:: NC_000001.11:149888638:G:A,NC_000001.11:149888638:G:C
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.149888639G>A, NC_000001.11:g.149888639G>C, NW_003871055.3:g.6704052G>A, NW_003871055.3:g.6704052G>C, NC_000001.10:g.149860189G>A, NC_000001.10:g.149860189G>C

Select item 148343325911.

rs1483433259 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:149889259 (GRCh38)
1:149860809 (GRCh37)
Canonical SPDI:: NC_000001.11:149889258:C:G
Gene:: H2AC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000038/10 (TOPMED)
HGVS:: NC_000001.11:g.149889259C>G, NW_003871055.3:g.6704672C>G, NC_000001.10:g.149860809C>G

Select item 148336121812.

rs1483361218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:149888370 (GRCh38)
1:149859920 (GRCh37)
Canonical SPDI:: NC_000001.11:149888369:G:C
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.149888370G>C, NW_003871055.3:g.6703783G>C, NC_000001.10:g.149859920G>C

Select item 148078413613.

rs1480784136 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149889497 (GRCh38)
1:149861047 (GRCh37)
Canonical SPDI:: NC_000001.11:149889496:C:T
Gene:: H2AC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149889497C>T, NW_003871055.3:g.6704910C>T, NC_000001.10:g.149861047C>T

Select item 147992963014.

rs1479929630 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTTG [Show Flanks]
Chromosome:: 1:149888255 (GRCh38)
1:149859806 (GRCh37)
Canonical SPDI:: NC_000001.11:149888255:TTTGCTTTGCTTTG:TTTGCTTTGCTTTGCTTTG
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTGCTTTGCTTTGCTTTG=0./0 (ALFA)
TTTGC=0.000014/2 (GnomAD)
TTTGC=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.149888260CTTTG[3], NW_003871055.3:g.6703673CTTTG[3], NC_000001.10:g.149859810CTTTG[3]

Select item 147689257415.

rs1476892574 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:149888611 (GRCh38)
1:149860161 (GRCh37)
Canonical SPDI:: NC_000001.11:149888610:A:G
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149888611A>G, NW_003871055.3:g.6704024A>G, NC_000001.10:g.149860161A>G

Select item 147602127316.

rs1476021273 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 1:149889861 (GRCh38)
1:149861411 (GRCh37)
Canonical SPDI:: NC_000001.11:149889860:G:
Gene:: H2AC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
-=0.001239/21 (TOMMO)
HGVS:: NC_000001.11:g.149889861del, NW_003871055.3:g.6705274del, NC_000001.10:g.149861411del

Select item 147524978017.

rs1475249780 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTG>- [Show Flanks]
Chromosome:: 1:149888029 (GRCh38)
1:149859579 (GRCh37)
Canonical SPDI:: NC_000001.11:149888025:TTGATTG:TTG
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TTG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149888029_149888032del, NW_003871055.3:g.6703442_6703445del, NC_000001.10:g.149859579_149859582del

Select item 147456932618.

rs1474569326 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:149888349 (GRCh38)
1:149859899 (GRCh37)
Canonical SPDI:: NC_000001.11:149888348:G:A
Gene:: H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.149888349G>A, NW_003871055.3:g.6703762G>A, NC_000001.10:g.149859899G>A

Select item 147358935719.

rs1473589357 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:149888683 (GRCh38)
1:149860233 (GRCh37)
Canonical SPDI:: NC_000001.11:149888682:C:A,NC_000001.11:149888682:C:T
Gene:: H2AC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.149888683C>A, NC_000001.11:g.149888683C>T, NW_003871055.3:g.6704096C>A, NW_003871055.3:g.6704096C>T, NC_000001.10:g.149860233C>A, NC_000001.10:g.149860233C>T

Select item 147339318220.

rs1473393182 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:149887548 (GRCh38)
1:149859098 (GRCh37)
Canonical SPDI:: NC_000001.11:149887547:A:G
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: synonymous_variant,2KB_upstream_variant,coding_sequence_variant,upstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000087/2 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.149887548A>G, NW_003871055.3:g.6702961A>G, NC_000001.10:g.149859098A>G, NM_175065.3:c.369T>C, NM_175065.2:c.369T>C