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1.

rs1491076755 has merged into rs3049036 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    TTTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
    Chromosome:
    3:49418504 (GRCh38)
    3:49455937 (GRCh37)
    Canonical SPDI:
    NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000003.12:49418494:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
    Gene:
    AMT (Varview)
    Functional Consequence:
    intron_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    TTTTTTTTT=0./0 (ALFA)
    -=0.000004/1 (TOPMED)
    HGVS:
    NC_000003.12:g.49418504_49418518del, NC_000003.12:g.49418505_49418518del, NC_000003.12:g.49418506_49418518del, NC_000003.12:g.49418507_49418518del, NC_000003.12:g.49418508_49418518del, NC_000003.12:g.49418509_49418518del, NC_000003.12:g.49418510_49418518del, NC_000003.12:g.49418511_49418518del, NC_000003.12:g.49418512_49418518del, NC_000003.12:g.49418513_49418518del, NC_000003.12:g.49418514_49418518del, NC_000003.12:g.49418515_49418518del, NC_000003.12:g.49418516_49418518del, NC_000003.12:g.49418517_49418518del, NC_000003.12:g.49418518del, NC_000003.12:g.49418518dup, NC_000003.12:g.49418517_49418518dup, NC_000003.12:g.49418516_49418518dup, NC_000003.12:g.49418515_49418518dup, NC_000003.12:g.49418514_49418518dup, NC_000003.12:g.49418513_49418518dup, NC_000003.12:g.49418512_49418518dup, NC_000003.12:g.49418511_49418518dup, NC_000003.12:g.49418510_49418518dup, NC_000003.12:g.49418509_49418518dup, NC_000003.12:g.49418508_49418518dup, NC_000003.12:g.49418507_49418518dup, NC_000003.12:g.49418506_49418518dup, NC_000003.12:g.49418505_49418518dup, NC_000003.12:g.49418518_49418519insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000003.11:g.49455937_49455951del, NC_000003.11:g.49455938_49455951del, NC_000003.11:g.49455939_49455951del, NC_000003.11:g.49455940_49455951del, NC_000003.11:g.49455941_49455951del, NC_000003.11:g.49455942_49455951del, NC_000003.11:g.49455943_49455951del, NC_000003.11:g.49455944_49455951del, NC_000003.11:g.49455945_49455951del, NC_000003.11:g.49455946_49455951del, NC_000003.11:g.49455947_49455951del, NC_000003.11:g.49455948_49455951del, NC_000003.11:g.49455949_49455951del, NC_000003.11:g.49455950_49455951del, NC_000003.11:g.49455951del, NC_000003.11:g.49455951dup, NC_000003.11:g.49455950_49455951dup, NC_000003.11:g.49455949_49455951dup, NC_000003.11:g.49455948_49455951dup, NC_000003.11:g.49455947_49455951dup, NC_000003.11:g.49455946_49455951dup, NC_000003.11:g.49455945_49455951dup, NC_000003.11:g.49455944_49455951dup, NC_000003.11:g.49455943_49455951dup, NC_000003.11:g.49455942_49455951dup, NC_000003.11:g.49455941_49455951dup, NC_000003.11:g.49455940_49455951dup, NC_000003.11:g.49455939_49455951dup, NC_000003.11:g.49455938_49455951dup, NC_000003.11:g.49455951_49455952insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_015986.1:g.9170_9184del, NG_015986.1:g.9171_9184del, NG_015986.1:g.9172_9184del, NG_015986.1:g.9173_9184del, NG_015986.1:g.9174_9184del, NG_015986.1:g.9175_9184del, NG_015986.1:g.9176_9184del, NG_015986.1:g.9177_9184del, NG_015986.1:g.9178_9184del, NG_015986.1:g.9179_9184del, NG_015986.1:g.9180_9184del, NG_015986.1:g.9181_9184del, NG_015986.1:g.9182_9184del, NG_015986.1:g.9183_9184del, NG_015986.1:g.9184del, NG_015986.1:g.9184dup, NG_015986.1:g.9183_9184dup, NG_015986.1:g.9182_9184dup, NG_015986.1:g.9181_9184dup, NG_015986.1:g.9180_9184dup, NG_015986.1:g.9179_9184dup, NG_015986.1:g.9178_9184dup, NG_015986.1:g.9177_9184dup, NG_015986.1:g.9176_9184dup, NG_015986.1:g.9175_9184dup, NG_015986.1:g.9174_9184dup, NG_015986.1:g.9173_9184dup, NG_015986.1:g.9172_9184dup, NG_015986.1:g.9171_9184dup, NG_015986.1:g.9184_9185insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    2.

    rs1490693241 [Homo sapiens]
      Variant type:
      SNV
      Alleles:
      A>G [Show Flanks]
      Chromosome:
      3:49416447 (GRCh38)
      3:49453880 (GRCh37)
      Canonical SPDI:
      NC_000003.12:49416446:A:G
      Gene:
      AMT (Varview), TCTA (Varview)
      Functional Consequence:
      3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
      Validated:
      by frequency,by alfa,by cluster
      MAF:
      G=0./0 (ALFA)
      G=0.000004/1 (TOPMED)
      G=0.000007/1 (GnomAD)
      HGVS:
      3.

      rs1490459688 [Homo sapiens]
        Variant type:
        SNV
        Alleles:
        C>T [Show Flanks]
        Chromosome:
        3:49423964 (GRCh38)
        3:49461397 (GRCh37)
        Canonical SPDI:
        NC_000003.12:49423963:C:T
        Gene:
        AMT (Varview), NICN1 (Varview)
        Functional Consequence:
        upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
        Validated:
        by frequency,by alfa
        MAF:
        T=0./0 (ALFA)
        HGVS:
        4.

        rs1490451340 [Homo sapiens]
          Variant type:
          SNV
          Alleles:
          C>T [Show Flanks]
          Chromosome:
          3:49418088 (GRCh38)
          3:49455521 (GRCh37)
          Canonical SPDI:
          NC_000003.12:49418087:C:T
          Gene:
          AMT (Varview)
          Functional Consequence:
          intron_variant
          Validated:
          by frequency,by alfa,by cluster
          MAF:
          T=0.000224/1 (ALFA)
          T=0.000014/2 (GnomAD)
          T=0.000223/1 (Estonian)
          HGVS:
          5.

          rs1490121045 [Homo sapiens]
            Variant type:
            DEL
            Alleles:
            GTT>- [Show Flanks]
            Chromosome:
            3:49419924 (GRCh38)
            3:49457357 (GRCh37)
            Canonical SPDI:
            NC_000003.12:49419923:GTT:
            Gene:
            AMT (Varview)
            Functional Consequence:
            intron_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            -=0.000071/1 (ALFA)
            -=0.000014/2 (GnomAD)
            -=0.000038/10 (TOPMED)
            HGVS:
            6.

            rs1489956984 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              T>C [Show Flanks]
              Chromosome:
              3:49418726 (GRCh38)
              3:49456159 (GRCh37)
              Canonical SPDI:
              NC_000003.12:49418725:T:C
              Gene:
              AMT (Varview)
              Functional Consequence:
              intron_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              C=0.000132/2 (ALFA)
              C=0.000015/2 (GnomAD)
              C=0.000446/2 (Estonian)
              C=0.000531/9 (TOMMO)
              HGVS:
              7.

              rs1489892184 [Homo sapiens]
                Variant type:
                SNV
                Alleles:
                A>G [Show Flanks]
                Chromosome:
                3:49418128 (GRCh38)
                3:49455561 (GRCh37)
                Canonical SPDI:
                NC_000003.12:49418127:A:G
                Gene:
                AMT (Varview)
                Functional Consequence:
                intron_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                G=0./0 (ALFA)
                G=0.000007/1 (GnomAD)
                G=0.000008/2 (TOPMED)
                G=0.000035/1 (TOMMO)
                HGVS:
                8.

                rs1489778356 [Homo sapiens]
                  Variant type:
                  SNV
                  Alleles:
                  C>G [Show Flanks]
                  Chromosome:
                  3:49423369 (GRCh38)
                  3:49460802 (GRCh37)
                  Canonical SPDI:
                  NC_000003.12:49423368:C:G
                  Gene:
                  AMT (Varview), NICN1 (Varview)
                  Functional Consequence:
                  upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
                  Validated:
                  by frequency,by alfa,by cluster
                  MAF:
                  G=0./0 (ALFA)
                  G=0.000004/1 (TOPMED)
                  G=0.000007/1 (GnomAD)
                  HGVS:
                  9.

                  rs1489152600 [Homo sapiens]
                    Variant type:
                    SNV
                    Alleles:
                    G>A [Show Flanks]
                    Chromosome:
                    3:49417549 (GRCh38)
                    3:49454982 (GRCh37)
                    Canonical SPDI:
                    NC_000003.12:49417548:G:A
                    Gene:
                    AMT (Varview)
                    Functional Consequence:
                    coding_sequence_variant,non_coding_transcript_variant,intron_variant,synonymous_variant
                    Clinical significance:
                    likely-benign
                    Validated:
                    by frequency,by alfa
                    MAF:
                    A=0.000111/1 (ALFA)
                    A=0.000004/1 (GnomAD_exomes)
                    HGVS:
                    10.

                    rs1489093299 [Homo sapiens]
                      Variant type:
                      SNV
                      Alleles:
                      G>A [Show Flanks]
                      Chromosome:
                      3:49423483 (GRCh38)
                      3:49460916 (GRCh37)
                      Canonical SPDI:
                      NC_000003.12:49423482:G:A
                      Gene:
                      AMT (Varview), NICN1 (Varview)
                      Functional Consequence:
                      upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
                      Validated:
                      by frequency,by alfa,by cluster
                      MAF:
                      A=0.000071/1 (ALFA)
                      A=0.00003/8 (TOPMED)
                      A=0.000057/8 (GnomAD)
                      A=0.00006/1 (TOMMO)
                      A=0.000156/1 (1000Genomes)
                      HGVS:
                      11.

                      rs1488357513 [Homo sapiens]
                        Variant type:
                        DELINS
                        Alleles:
                        CTTT>- [Show Flanks]
                        Chromosome:
                        3:49418494 (GRCh38)
                        3:49455927 (GRCh37)
                        Canonical SPDI:
                        NC_000003.12:49418490:TTTCTTT:TTT
                        Gene:
                        AMT (Varview)
                        Functional Consequence:
                        intron_variant
                        Validated:
                        by frequency,by alfa
                        MAF:
                        TTT=0./0 (ALFA)
                        -=0.00006/4 (GnomAD)
                        HGVS:
                        12.

                        rs1487986234 [Homo sapiens]
                          Variant type:
                          SNV
                          Alleles:
                          A>G [Show Flanks]
                          Chromosome:
                          3:49417878 (GRCh38)
                          3:49455311 (GRCh37)
                          Canonical SPDI:
                          NC_000003.12:49417877:A:G
                          Gene:
                          AMT (Varview)
                          Functional Consequence:
                          coding_sequence_variant,missense_variant,non_coding_transcript_variant
                          Validated:
                          by frequency
                          MAF:
                          G=0.000004/1 (GnomAD_exomes)
                          HGVS:
                          13.

                          rs1487811717 [Homo sapiens]
                            Variant type:
                            SNV
                            Alleles:
                            C>G [Show Flanks]
                            Chromosome:
                            3:49420232 (GRCh38)
                            3:49457665 (GRCh37)
                            Canonical SPDI:
                            NC_000003.12:49420231:C:G
                            Gene:
                            AMT (Varview)
                            Functional Consequence:
                            coding_sequence_variant,non_coding_transcript_variant,intron_variant,missense_variant
                            Validated:
                            by frequency,by alfa
                            MAF:
                            G=0./0 (ALFA)
                            G=0.000004/1 (TOPMED)
                            HGVS:
                            14.

                            rs1486684330 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              A>G [Show Flanks]
                              Chromosome:
                              3:49421607 (GRCh38)
                              3:49459040 (GRCh37)
                              Canonical SPDI:
                              NC_000003.12:49421606:A:G
                              Gene:
                              AMT (Varview)
                              Functional Consequence:
                              intron_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              G=0./0 (ALFA)
                              G=0.000004/1 (GnomAD_exomes)
                              G=0.000008/2 (TOPMED)
                              HGVS:
                              15.

                              rs1486489337 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                C>T [Show Flanks]
                                Chromosome:
                                3:49424343 (GRCh38)
                                3:49461776 (GRCh37)
                                Canonical SPDI:
                                NC_000003.12:49424342:C:T
                                Gene:
                                AMT (Varview), NICN1 (Varview)
                                Functional Consequence:
                                upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
                                Validated:
                                by frequency,by alfa
                                MAF:
                                T=0./0 (ALFA)
                                T=0.000007/1 (GnomAD)
                                HGVS:
                                16.

                                rs1486479023 [Homo sapiens]
                                  Variant type:
                                  SNV
                                  Alleles:
                                  A>G,T [Show Flanks]
                                  Chromosome:
                                  3:49423221 (GRCh38)
                                  3:49460654 (GRCh37)
                                  Canonical SPDI:
                                  NC_000003.12:49423220:A:G,NC_000003.12:49423220:A:T
                                  Gene:
                                  AMT (Varview), NICN1 (Varview)
                                  Functional Consequence:
                                  upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
                                  Validated:
                                  by frequency,by alfa,by cluster
                                  MAF:
                                  G=0./0 (ALFA)
                                  G=0.000011/3 (TOPMED)
                                  HGVS:
                                  17.

                                  rs1486173267 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    G>C [Show Flanks]
                                    Chromosome:
                                    3:49420722 (GRCh38)
                                    3:49458155 (GRCh37)
                                    Canonical SPDI:
                                    NC_000003.12:49420721:G:C
                                    Gene:
                                    AMT (Varview)
                                    Functional Consequence:
                                    intron_variant
                                    Validated:
                                    by frequency,by alfa
                                    MAF:
                                    C=0./0 (ALFA)
                                    C=0.000011/3 (TOPMED)
                                    HGVS:
                                    18.

                                    rs1485738422 [Homo sapiens]
                                      Variant type:
                                      SNV
                                      Alleles:
                                      A>G [Show Flanks]
                                      Chromosome:
                                      3:49422054 (GRCh38)
                                      3:49459487 (GRCh37)
                                      Canonical SPDI:
                                      NC_000003.12:49422053:A:G
                                      Gene:
                                      AMT (Varview), NICN1 (Varview)
                                      Functional Consequence:
                                      intron_variant,downstream_transcript_variant,500B_downstream_variant
                                      Validated:
                                      by frequency
                                      MAF:
                                      G=0.000004/1 (GnomAD_exomes)
                                      HGVS:
                                      19.

                                      rs1485270149 [Homo sapiens]
                                        Variant type:
                                        SNV
                                        Alleles:
                                        C>G,T [Show Flanks]
                                        Chromosome:
                                        3:49422268 (GRCh38)
                                        3:49459701 (GRCh37)
                                        Canonical SPDI:
                                        NC_000003.12:49422267:C:G,NC_000003.12:49422267:C:T
                                        Gene:
                                        AMT (Varview), NICN1 (Varview)
                                        Functional Consequence:
                                        coding_sequence_variant,intron_variant,downstream_transcript_variant,missense_variant,500B_downstream_variant
                                        Validated:
                                        by frequency,by alfa,by cluster
                                        MAF:
                                        T=0./0 (ALFA)
                                        G=0.000004/1 (GnomAD_exomes)
                                        T=0.000004/1 (TOPMED)
                                        HGVS:
                                        20.

                                        rs1484764128 [Homo sapiens]
                                          Variant type:
                                          SNV
                                          Alleles:
                                          G>C [Show Flanks]
                                          Chromosome:
                                          3:49417779 (GRCh38)
                                          3:49455212 (GRCh37)
                                          Canonical SPDI:
                                          NC_000003.12:49417778:G:C
                                          Gene:
                                          AMT (Varview)
                                          Functional Consequence:
                                          intron_variant
                                          Validated:
                                          by frequency,by alfa,by cluster
                                          MAF:
                                          C=0./0 (ALFA)
                                          C=0.000004/1 (GnomAD_exomes)
                                          C=0.000008/2 (TOPMED)
                                          HGVS:

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