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1.

rs1491495631 has merged into rs112126446 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    CACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA,CACACACACACACACACACACACACA,CACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACA [Show Flanks]
    Chromosome:
    1:160323004 (GRCh38)
    1:160292794 (GRCh37)
    Canonical SPDI:
    NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACA,NC_000001.11:160322989:CACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACACACACA
    Gene:
    COPA (Varview)
    Functional Consequence:
    intron_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    CACACACACACACACA=0./0 (ALFA)
    -=0.000004/1 (TOPMED)
    HGVS:
    NC_000001.11:g.160322990CA[7], NC_000001.11:g.160322990CA[8], NC_000001.11:g.160322990CA[9], NC_000001.11:g.160322990CA[10], NC_000001.11:g.160322990CA[11], NC_000001.11:g.160322990CA[12], NC_000001.11:g.160322990CA[13], NC_000001.11:g.160322990CA[15], NC_000001.11:g.160322990CA[16], NC_000001.11:g.160322990CA[17], NC_000001.11:g.160322990CA[18], NC_000001.11:g.160322990CA[19], NC_000001.11:g.160322990CA[20], NC_000001.11:g.160322990CA[21], NC_000001.11:g.160322990CA[25], NC_000001.10:g.160292780CA[7], NC_000001.10:g.160292780CA[8], NC_000001.10:g.160292780CA[9], NC_000001.10:g.160292780CA[10], NC_000001.10:g.160292780CA[11], NC_000001.10:g.160292780CA[12], NC_000001.10:g.160292780CA[13], NC_000001.10:g.160292780CA[15], NC_000001.10:g.160292780CA[16], NC_000001.10:g.160292780CA[17], NC_000001.10:g.160292780CA[18], NC_000001.10:g.160292780CA[19], NC_000001.10:g.160292780CA[20], NC_000001.10:g.160292780CA[21], NC_000001.10:g.160292780CA[25], NG_050927.1:g.25548TG[7], NG_050927.1:g.25548TG[8], NG_050927.1:g.25548TG[9], NG_050927.1:g.25548TG[10], NG_050927.1:g.25548TG[11], NG_050927.1:g.25548TG[12], NG_050927.1:g.25548TG[13], NG_050927.1:g.25548TG[15], NG_050927.1:g.25548TG[16], NG_050927.1:g.25548TG[17], NG_050927.1:g.25548TG[18], NG_050927.1:g.25548TG[19], NG_050927.1:g.25548TG[20], NG_050927.1:g.25548TG[21], NG_050927.1:g.25548TG[25]
    2.

    rs1491464967 has merged into rs10714948 [Homo sapiens]
      Variant type:
      DELINS
      Alleles:
      TTTTTTT>-,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
      Chromosome:
      1:160309752 (GRCh38)
      1:160279542 (GRCh37)
      Canonical SPDI:
      NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:160309742:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
      Gene:
      COPA (Varview)
      Functional Consequence:
      intron_variant
      Validated:
      by frequency,by alfa,by cluster
      MAF:
      TTTTTTTTTTTTT=0./0 (ALFA)
      -=0.2567/154 (NorthernSweden)
      -=0.4/16 (GENOME_DK)
      HGVS:
      NC_000001.11:g.160309752_160309758del, NC_000001.11:g.160309754_160309758del, NC_000001.11:g.160309755_160309758del, NC_000001.11:g.160309756_160309758del, NC_000001.11:g.160309757_160309758del, NC_000001.11:g.160309758del, NC_000001.11:g.160309758dup, NC_000001.11:g.160309757_160309758dup, NC_000001.11:g.160309753_160309758dup, NC_000001.11:g.160309749_160309758dup, NC_000001.10:g.160279542_160279548del, NC_000001.10:g.160279544_160279548del, NC_000001.10:g.160279545_160279548del, NC_000001.10:g.160279546_160279548del, NC_000001.10:g.160279547_160279548del, NC_000001.10:g.160279548del, NC_000001.10:g.160279548dup, NC_000001.10:g.160279547_160279548dup, NC_000001.10:g.160279543_160279548dup, NC_000001.10:g.160279539_160279548dup, NG_050927.1:g.38816_38822del, NG_050927.1:g.38818_38822del, NG_050927.1:g.38819_38822del, NG_050927.1:g.38820_38822del, NG_050927.1:g.38821_38822del, NG_050927.1:g.38822del, NG_050927.1:g.38822dup, NG_050927.1:g.38821_38822dup, NG_050927.1:g.38817_38822dup, NG_050927.1:g.38813_38822dup
      3.

      rs1491421126 [Homo sapiens]
        Variant type:
        DELINS
        Alleles:
        CT>- [Show Flanks]
        Chromosome:
        1:160304023 (GRCh38)
        1:160273813 (GRCh37)
        Canonical SPDI:
        NC_000001.11:160304021:TCT:T
        Gene:
        COPA (Varview)
        Functional Consequence:
        intron_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        T=0./0 (ALFA)
        -=0.000004/1 (TOPMED)
        -=0.000007/1 (GnomAD)
        HGVS:
        4.

        rs1491341058 has merged into rs10562824 [Homo sapiens]
          Variant type:
          DELINS
          Alleles:
          AAAAAAAAAAAA>-,A,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA [Show Flanks]
          Chromosome:
          1:160335895 (GRCh38)
          1:160305685 (GRCh37)
          Canonical SPDI:
          NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:160335883:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          Gene:
          COPA (Varview)
          Functional Consequence:
          intron_variant
          Validated:
          by frequency,by alfa,by cluster
          MAF:
          AAAAAAAAAAA=0./0 (ALFA)
          AAAAAAAAAAAA=0./0 (GENOME_DK)
          HGVS:
          NC_000001.11:g.160335895_160335906del, NC_000001.11:g.160335896_160335906del, NC_000001.11:g.160335899_160335906del, NC_000001.11:g.160335901_160335906del, NC_000001.11:g.160335902_160335906del, NC_000001.11:g.160335903_160335906del, NC_000001.11:g.160335904_160335906del, NC_000001.11:g.160335905_160335906del, NC_000001.11:g.160335906del, NC_000001.11:g.160335906dup, NC_000001.11:g.160335905_160335906dup, NC_000001.11:g.160335904_160335906dup, NC_000001.11:g.160335903_160335906dup, NC_000001.11:g.160335902_160335906dup, NC_000001.11:g.160335901_160335906dup, NC_000001.11:g.160335900_160335906dup, NC_000001.11:g.160335899_160335906dup, NC_000001.10:g.160305685_160305696del, NC_000001.10:g.160305686_160305696del, NC_000001.10:g.160305689_160305696del, NC_000001.10:g.160305691_160305696del, NC_000001.10:g.160305692_160305696del, NC_000001.10:g.160305693_160305696del, NC_000001.10:g.160305694_160305696del, NC_000001.10:g.160305695_160305696del, NC_000001.10:g.160305696del, NC_000001.10:g.160305696dup, NC_000001.10:g.160305695_160305696dup, NC_000001.10:g.160305694_160305696dup, NC_000001.10:g.160305693_160305696dup, NC_000001.10:g.160305692_160305696dup, NC_000001.10:g.160305691_160305696dup, NC_000001.10:g.160305690_160305696dup, NC_000001.10:g.160305689_160305696dup, NG_050927.1:g.12670_12681del, NG_050927.1:g.12671_12681del, NG_050927.1:g.12674_12681del, NG_050927.1:g.12676_12681del, NG_050927.1:g.12677_12681del, NG_050927.1:g.12678_12681del, NG_050927.1:g.12679_12681del, NG_050927.1:g.12680_12681del, NG_050927.1:g.12681del, NG_050927.1:g.12681dup, NG_050927.1:g.12680_12681dup, NG_050927.1:g.12679_12681dup, NG_050927.1:g.12678_12681dup, NG_050927.1:g.12677_12681dup, NG_050927.1:g.12676_12681dup, NG_050927.1:g.12675_12681dup, NG_050927.1:g.12674_12681dup
          5.

          rs1491311634 [Homo sapiens]
            Variant type:
            DEL
            Alleles:
            CA>- [Show Flanks]
            Chromosome:
            1:160335883 (GRCh38)
            1:160305673 (GRCh37)
            Canonical SPDI:
            NC_000001.11:160335882:CA:
            Gene:
            COPA (Varview)
            Functional Consequence:
            intron_variant
            Validated:
            by frequency,by alfa
            MAF:
            -=0.00059/7 (ALFA)
            HGVS:
            6.

            rs1491301968 [Homo sapiens]
              Variant type:
              INS
              Alleles:
              ->A [Show Flanks]
              Chromosome:
              1:160309743 (GRCh38)
              1:160279534 (GRCh37)
              Canonical SPDI:
              NC_000001.11:160309743::A
              Gene:
              COPA (Varview)
              Functional Consequence:
              intron_variant
              HGVS:
              7.

              rs1491293706 [Homo sapiens]
                Variant type:
                DELINS
                Alleles:
                AC>- [Show Flanks]
                Chromosome:
                1:160293783 (GRCh38)
                1:160263573 (GRCh37)
                Canonical SPDI:
                NC_000001.11:160293781:CAC:C
                Gene:
                COPA (Varview)
                Functional Consequence:
                intron_variant
                Validated:
                by frequency,by cluster
                MAF:
                -=0./0 (TWINSUK)
                -=0.0003/1 (ALSPAC)
                HGVS:
                8.

                rs1491194848 [Homo sapiens]
                  Variant type:
                  INS
                  Alleles:
                  ->AG [Show Flanks]
                  Chromosome:
                  1:160331665 (GRCh38)
                  1:160301456 (GRCh37)
                  Canonical SPDI:
                  NC_000001.11:160331665::AG
                  Gene:
                  COPA (Varview)
                  Functional Consequence:
                  intron_variant
                  Validated:
                  by frequency,by alfa
                  MAF:
                  AG=0./0 (ALFA)
                  HGVS:
                  9.

                  rs1491148485 [Homo sapiens]
                    Variant type:
                    DELINS
                    Alleles:
                    ->C [Show Flanks]
                    Chromosome:
                    1:160304022 (GRCh38)
                    1:160273813 (GRCh37)
                    Canonical SPDI:
                    NC_000001.11:160304022:C:CC
                    Gene:
                    COPA (Varview)
                    Functional Consequence:
                    intron_variant
                    Validated:
                    by frequency,by alfa,by cluster
                    MAF:
                    CC=0./0 (ALFA)
                    C=0.000004/1 (TOPMED)
                    C=0.000007/1 (GnomAD)
                    HGVS:
                    10.

                    rs1491106235 [Homo sapiens]
                      Variant type:
                      DELINS
                      Alleles:
                      ->GTT [Show Flanks]
                      Chromosome:
                      1:160343955 (GRCh38)
                      1:160313746 (GRCh37)
                      Canonical SPDI:
                      NC_000001.11:160343955:TT:TTGTT
                      Gene:
                      COPA (Varview), NCSTN (Varview)
                      Functional Consequence:
                      intron_variant,upstream_transcript_variant,2KB_upstream_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      TTGTT=0.00008/1 (ALFA)
                      TTG=0.00039/7 (GnomAD)
                      HGVS:
                      11.

                      rs1491003915 [Homo sapiens]
                        Variant type:
                        SNV
                        Alleles:
                        G>A [Show Flanks]
                        Chromosome:
                        1:160337462 (GRCh38)
                        1:160307252 (GRCh37)
                        Canonical SPDI:
                        NC_000001.11:160337461:G:A
                        Gene:
                        COPA (Varview)
                        Functional Consequence:
                        intron_variant
                        Validated:
                        by frequency,by alfa,by cluster
                        MAF:
                        A=0.000142/2 (ALFA)
                        A=0.000004/1 (TOPMED)
                        A=0.000021/3 (GnomAD)
                        HGVS:
                        12.

                        rs1491000309 [Homo sapiens]
                          Variant type:
                          DEL
                          Alleles:
                          C>- [Show Flanks]
                          Chromosome:
                          1:160294141 (GRCh38)
                          1:160263931 (GRCh37)
                          Canonical SPDI:
                          NC_000001.11:160294140:C:
                          Gene:
                          COPA (Varview)
                          Functional Consequence:
                          intron_variant
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          -=0./0 (ALFA)
                          -=0.000015/4 (TOPMED)
                          -=0.000021/3 (GnomAD)
                          HGVS:
                          13.

                          rs1490944869 [Homo sapiens]
                            Variant type:
                            DELINS
                            Alleles:
                            A>- [Show Flanks]
                            Chromosome:
                            1:160301768 (GRCh38)
                            1:160271558 (GRCh37)
                            Canonical SPDI:
                            NC_000001.11:160301767:AAAAA:AAAA
                            Gene:
                            COPA (Varview)
                            Functional Consequence:
                            intron_variant
                            Validated:
                            by frequency,by alfa
                            MAF:
                            AAAA=0./0 (ALFA)
                            HGVS:
                            14.

                            rs1490933773 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              T>C [Show Flanks]
                              Chromosome:
                              1:160292762 (GRCh38)
                              1:160262552 (GRCh37)
                              Canonical SPDI:
                              NC_000001.11:160292761:T:C
                              Gene:
                              COPA (Varview), LOC107985219 (Varview)
                              Functional Consequence:
                              non_coding_transcript_variant,intron_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              C=0./0 (ALFA)
                              C=0.000019/5 (TOPMED)
                              C=0.000021/3 (GnomAD)
                              HGVS:
                              15.

                              rs1490907370 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                T>C [Show Flanks]
                                Chromosome:
                                1:160307194 (GRCh38)
                                1:160276984 (GRCh37)
                                Canonical SPDI:
                                NC_000001.11:160307193:T:C
                                Gene:
                                COPA (Varview)
                                Functional Consequence:
                                missense_variant,coding_sequence_variant
                                Validated:
                                by frequency
                                MAF:
                                C=0.000008/2 (GnomAD_exomes)
                                HGVS:
                                16.

                                rs1490888176 [Homo sapiens]
                                  Variant type:
                                  SNV
                                  Alleles:
                                  A>C [Show Flanks]
                                  Chromosome:
                                  1:160301967 (GRCh38)
                                  1:160271757 (GRCh37)
                                  Canonical SPDI:
                                  NC_000001.11:160301966:A:C
                                  Gene:
                                  COPA (Varview)
                                  Functional Consequence:
                                  intron_variant
                                  Validated:
                                  by frequency,by alfa
                                  MAF:
                                  C=0./0 (ALFA)
                                  C=0.000007/1 (GnomAD)
                                  HGVS:
                                  17.

                                  rs1490882090 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    C>A,G [Show Flanks]
                                    Chromosome:
                                    1:160313974 (GRCh38)
                                    1:160283764 (GRCh37)
                                    Canonical SPDI:
                                    NC_000001.11:160313973:C:A,NC_000001.11:160313973:C:G
                                    Gene:
                                    COPA (Varview)
                                    Functional Consequence:
                                    intron_variant
                                    Clinical significance:
                                    likely-benign
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    G=0.000071/1 (ALFA)
                                    A=0.000008/2 (GnomAD_exomes)
                                    G=0.000011/3 (TOPMED)
                                    G=0.000014/2 (GnomAD)
                                    HGVS:
                                    18.

                                    rs1490854887 [Homo sapiens]
                                      Variant type:
                                      SNV
                                      Alleles:
                                      G>A [Show Flanks]
                                      Chromosome:
                                      1:160326603 (GRCh38)
                                      1:160296393 (GRCh37)
                                      Canonical SPDI:
                                      NC_000001.11:160326602:G:A
                                      Gene:
                                      COPA (Varview)
                                      Functional Consequence:
                                      intron_variant
                                      Validated:
                                      by frequency,by alfa
                                      MAF:
                                      A=0./0 (ALFA)
                                      A=0.000008/2 (TOPMED)
                                      HGVS:
                                      19.

                                      rs1490785769 [Homo sapiens]
                                        Variant type:
                                        SNV
                                        Alleles:
                                        G>A,C [Show Flanks]
                                        Chromosome:
                                        1:160328520 (GRCh38)
                                        1:160298310 (GRCh37)
                                        Canonical SPDI:
                                        NC_000001.11:160328519:G:A,NC_000001.11:160328519:G:C
                                        Gene:
                                        COPA (Varview)
                                        Functional Consequence:
                                        intron_variant
                                        Validated:
                                        by frequency,by alfa,by cluster
                                        MAF:
                                        C=0./0 (ALFA)
                                        HGVS:
                                        20.

                                        rs1490781441 [Homo sapiens]
                                          Variant type:
                                          SNV
                                          Alleles:
                                          C>G [Show Flanks]
                                          Chromosome:
                                          1:160343753 (GRCh38)
                                          1:160313543 (GRCh37)
                                          Canonical SPDI:
                                          NC_000001.11:160343752:C:G
                                          Gene:
                                          COPA (Varview), NCSTN (Varview)
                                          Functional Consequence:
                                          intron_variant,upstream_transcript_variant,2KB_upstream_variant
                                          Validated:
                                          by frequency,by alfa
                                          MAF:
                                          G=0./0 (ALFA)
                                          G=0.000004/1 (TOPMED)
                                          HGVS:

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