SNP Links for Gene (Select 100874275) - SNP

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Items: 1 to 20 of 3882

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Select item 14912810431.

rs1491281043 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 4:100666038 (GRCh38)
4:101587196 (GRCh37)
Canonical SPDI:: NC_000004.12:100666038:C:CC
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.100666039dup, NC_000004.11:g.101587196dup

Select item 14912656332.

rs1491265633 has merged into rs56244221 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATATA>-,TATA,TATATATA [Show Flanks]
Chromosome:: 4:100665846 (GRCh38)
4:101587003 (GRCh37)
Canonical SPDI:: NC_000004.12:100665839:TATATATATATA:TATATA,NC_000004.12:100665839:TATATATATATA:TATATATATA,NC_000004.12:100665839:TATATATATATA:TATATATATATATA
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATA=0.000216/3 (ALFA)
-=0.000004/1 (TOPMED)
-=0.103035/516 (1000Genomes)
-=0.198333/119 (NorthernSweden)
-=0.2/8 (GENOME_DK)
HGVS:: NC_000004.12:g.100665840TA[3], NC_000004.12:g.100665840TA[5], NC_000004.12:g.100665840TA[7], NC_000004.11:g.101586997TA[3], NC_000004.11:g.101586997TA[5], NC_000004.11:g.101586997TA[7]

Select item 14911894873.

rs1491189487 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 4:100666039 (GRCh38)
4:101587196 (GRCh37)
Canonical SPDI:: NC_000004.12:100666037:TCT:T
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000043/6 (GnomAD)
HGVS:: NC_000004.12:g.100666039_100666040del, NC_000004.11:g.101587196_101587197del

Select item 14907799564.

rs1490779956 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:100675698 (GRCh38)
4:101596855 (GRCh37)
Canonical SPDI:: NC_000004.12:100675697:C:G
Gene:: LINC01216 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.100675698C>G, NC_000004.11:g.101596855C>G

Select item 14907411225.

rs1490741122 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 4:100660765 (GRCh38)
4:101581922 (GRCh37)
Canonical SPDI:: NC_000004.12:100660764:C:A,NC_000004.12:100660764:C:T
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000004.12:g.100660765C>A, NC_000004.12:g.100660765C>T, NC_000004.11:g.101581922C>A, NC_000004.11:g.101581922C>T

Select item 14907238216.

rs1490723821 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:100674639 (GRCh38)
4:101595796 (GRCh37)
Canonical SPDI:: NC_000004.12:100674638:T:A
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.100674639T>A, NC_000004.11:g.101595796T>A

Select item 14904915907.

rs1490491590 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:100668281 (GRCh38)
4:101589438 (GRCh37)
Canonical SPDI:: NC_000004.12:100668280:C:T
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.100668281C>T, NC_000004.11:g.101589438C>T

Select item 14903394748.

rs1490339474 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CC
Chromosome:: no mapping
Canonical SPDI:

Select item 14902526589.

rs1490252658 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:100660151 (GRCh38)
4:101581308 (GRCh37)
Canonical SPDI:: NC_000004.12:100660150:T:A
Gene:: LINC01216 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.100660151T>A, NC_000004.11:g.101581308T>A

Select item 149023401710.

rs1490234017 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:100674239 (GRCh38)
4:101595396 (GRCh37)
Canonical SPDI:: NC_000004.12:100674238:A:G
Gene:: LINC01216 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000546/1 (Korea1K)
G=0.000684/2 (KOREAN)
HGVS:: NC_000004.12:g.100674239A>G, NC_000004.11:g.101595396A>G, NR_046811.1:n.99T>C

Select item 149000088311.

rs1490000883 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:100667945 (GRCh38)
4:101589102 (GRCh37)
Canonical SPDI:: NC_000004.12:100667944:G:A,NC_000004.12:100667944:G:T
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000004.12:g.100667945G>A, NC_000004.12:g.100667945G>T, NC_000004.11:g.101589102G>A, NC_000004.11:g.101589102G>T

Select item 148995257912.

rs1489952579 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTTT>- [Show Flanks]
Chromosome:: 4:100676155 (GRCh38)
4:101597312 (GRCh37)
Canonical SPDI:: NC_000004.12:100676152:TTCTTTT:TT
Gene:: LINC01216 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: -=0.000026/3 (GnomAD)
HGVS:: NC_000004.12:g.100676155_100676159del, NC_000004.11:g.101597312_101597316del

Select item 148994516613.

rs1489945166 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 4:100667039 (GRCh38)
4:101588196 (GRCh37)
Canonical SPDI:: NC_000004.12:100667038:G:T
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.100667039G>T, NC_000004.11:g.101588196G>T

Select item 148960822114.

rs1489608221 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 4:100661304 (GRCh38)
4:101582461 (GRCh37)
Canonical SPDI:: NC_000004.12:100661303:G:C
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.100661304G>C, NC_000004.11:g.101582461G>C

Select item 148948513415.

rs1489485134 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:100676778 (GRCh38)
4:101597935 (GRCh37)
Canonical SPDI:: NC_000004.12:100676777:C:G
Gene:: LINC01216 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.100676778C>G, NC_000004.11:g.101597935C>G

Select item 148940385716.

rs1489403857 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 4:100668248 (GRCh38)
4:101589405 (GRCh37)
Canonical SPDI:: NC_000004.12:100668247:T:A,NC_000004.12:100668247:T:C
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.100668248T>A, NC_000004.12:g.100668248T>C, NC_000004.11:g.101589405T>A, NC_000004.11:g.101589405T>C

Select item 148935750517.

rs1489357505 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 4:100663267 (GRCh38)
4:101584425 (GRCh37)
Canonical SPDI:: NC_000004.12:100663267:T:TT
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.100663268dup, NC_000004.11:g.101584425dup

Select item 148916973218.

rs1489169732 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:100676688 (GRCh38)
4:101597845 (GRCh37)
Canonical SPDI:: NC_000004.12:100676687:C:T
Gene:: LINC01216 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000671/3 (ALFA)
T=0.000007/1 (GnomAD)
T=0.00067/3 (Estonian)
HGVS:: NC_000004.12:g.100676688C>T, NC_000004.11:g.101597845C>T

Select item 148900845819.

rs1489008458 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:100669321 (GRCh38)
4:101590478 (GRCh37)
Canonical SPDI:: NC_000004.12:100669320:A:G
Gene:: LINC01216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.100669321A>G, NC_000004.11:g.101590478A>G

Select item 148862927020.

rs1488629270 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 4:100665731 (GRCh38)
4:101586888 (GRCh37)
Canonical SPDI:: NC_000004.12:100665730:C:
Gene:: LINC01216 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.100665731del, NC_000004.11:g.101586888del, NR_046811.1:n.349del

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