Name: rs57399681
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs57399681

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr6:87674643-87674655 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₄ / delTTT / delTT / delT / …
del(T)₄ / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₄
Variation Type: Indel Insertion and Deletion
Frequency: dupT=0.00939 (144/15341, ALFA)
dupT=0.032 (19/598, NorthernSweden)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: ORC3 : Intron Variant
AKIRIN2 : 500B Downstream Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	15341	TTTTTTTTTTTTT=0.99042	TTTTTTTTT=0.00000, TTTTTTTTTT=0.00000, TTTTTTTTTTT=0.00000, TTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTT=0.00939, TTTTTTTTTTTTTTT=0.00020, TTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTT=0.00000	0.982174	0.000266	0.01756	2
European	Sub	11315	TTTTTTTTTTTTT=0.98701	TTTTTTTTT=0.00000, TTTTTTTTTT=0.00000, TTTTTTTTTTT=0.00000, TTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTT=0.01273, TTTTTTTTTTTTTTT=0.00027, TTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTT=0.00000	0.975654	0.000363	0.023983	1
African	Sub	2636	TTTTTTTTTTTTT=1.0000	TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	104	TTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
African American	Sub	2532	TTTTTTTTTTTTT=1.0000	TTTTTTTTT=0.0000, TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	104	TTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
East Asian	Sub	82	TTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	22	TTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	140	TTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Latin American 2	Sub	596	TTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	88	TTTTTTTTTTTTT=1.00	TTTTTTTTT=0.00, TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	462	TTTTTTTTTTTTT=1.000	TTTTTTTTT=0.000, TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	15341	(T)₁₃=0.99042	del(T)₄=0.00000, delTTT=0.00000, delTT=0.00000, delT=0.00000, dupT=0.00939, dupTT=0.00020, dupTTT=0.00000, dup(T)₄=0.00000
Allele Frequency Aggregator	European	Sub	11315	(T)₁₃=0.98701	del(T)₄=0.00000, delTTT=0.00000, delTT=0.00000, delT=0.00000, dupT=0.01273, dupTT=0.00027, dupTTT=0.00000, dup(T)₄=0.00000
Allele Frequency Aggregator	African	Sub	2636	(T)₁₃=1.0000	del(T)₄=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000, dup(T)₄=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	596	(T)₁₃=1.000	del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Other	Sub	462	(T)₁₃=1.000	del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Latin American 1	Sub	140	(T)₁₃=1.000	del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	Asian	Sub	104	(T)₁₃=1.000	del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000, dup(T)₄=0.000
Allele Frequency Aggregator	South Asian	Sub	88	(T)₁₃=1.00	del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00, dup(T)₄=0.00
Northern Sweden	ACPOP	Study-wide	598	- No frequency provided	dupT=0.032

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 6	NC_000006.12:g.87674652_87674655del
GRCh38.p14 chr 6	NC_000006.12:g.87674653_87674655del
GRCh38.p14 chr 6	NC_000006.12:g.87674654_87674655del
GRCh38.p14 chr 6	NC_000006.12:g.87674655del
GRCh38.p14 chr 6	NC_000006.12:g.87674655dup
GRCh38.p14 chr 6	NC_000006.12:g.87674654_87674655dup
GRCh38.p14 chr 6	NC_000006.12:g.87674653_87674655dup
GRCh38.p14 chr 6	NC_000006.12:g.87674652_87674655dup
GRCh37.p13 chr 6	NC_000006.11:g.88384370_88384373del
GRCh37.p13 chr 6	NC_000006.11:g.88384371_88384373del
GRCh37.p13 chr 6	NC_000006.11:g.88384372_88384373del
GRCh37.p13 chr 6	NC_000006.11:g.88384373del
GRCh37.p13 chr 6	NC_000006.11:g.88384373dup
GRCh37.p13 chr 6	NC_000006.11:g.88384372_88384373dup
GRCh37.p13 chr 6	NC_000006.11:g.88384371_88384373dup
GRCh37.p13 chr 6	NC_000006.11:g.88384370_88384373dup

Gene: ORC3, origin recognition complex subunit 3 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ORC3 transcript variant 3	NM_001197259.2:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant 2	NM_012381.4:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant 1	NM_181837.3:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X1	XM_017010632.3:c.2034-306… XM_017010632.3:c.2034-3062_2034-3059del	N/A	Intron Variant
ORC3 transcript variant X2	XM_017010633.3:c.2031-306… XM_017010633.3:c.2031-3062_2031-3059del	N/A	Intron Variant
ORC3 transcript variant X9	XM_047418550.1:c.1917-306… XM_047418550.1:c.1917-3062_1917-3059del	N/A	Intron Variant
ORC3 transcript variant X3	XM_005248704.3:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X5	XM_011535651.3:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X12	XM_011535652.4:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X4	XM_017010634.3:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X6	XM_017010635.3:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X7	XM_047418548.1:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X8	XM_047418549.1:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X10	XM_047418551.1:c.	N/A	Genic Downstream Transcript Variant
ORC3 transcript variant X11	XM_047418552.1:c.	N/A	Genic Downstream Transcript Variant

Gene: AKIRIN2, akirin 2 (minus strand) : 500B Downstream Variant

Molecule type	Change	Amino acid[Codon]	SO Term
AKIRIN2 transcript	NM_018064.4:c.	N/A	Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₃=	del(T)₄	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₄
GRCh38.p14 chr 6	NC_000006.12:g.87674643_87674655=	NC_000006.12:g.87674652_87674655del	NC_000006.12:g.87674653_87674655del	NC_000006.12:g.87674654_87674655del	NC_000006.12:g.87674655del	NC_000006.12:g.87674655dup	NC_000006.12:g.87674654_87674655dup	NC_000006.12:g.87674653_87674655dup	NC_000006.12:g.87674652_87674655dup
GRCh37.p13 chr 6	NC_000006.11:g.88384361_88384373=	NC_000006.11:g.88384370_88384373del	NC_000006.11:g.88384371_88384373del	NC_000006.11:g.88384372_88384373del	NC_000006.11:g.88384373del	NC_000006.11:g.88384373dup	NC_000006.11:g.88384372_88384373dup	NC_000006.11:g.88384371_88384373dup	NC_000006.11:g.88384370_88384373dup
ORC3 transcript variant X1	XM_017010632.3:c.2034-3071=	XM_017010632.3:c.2034-3062_2034-3059del	XM_017010632.3:c.2034-3061_2034-3059del	XM_017010632.3:c.2034-3060_2034-3059del	XM_017010632.3:c.2034-3059del	XM_017010632.3:c.2034-3059dup	XM_017010632.3:c.2034-3060_2034-3059dup	XM_017010632.3:c.2034-3061_2034-3059dup	XM_017010632.3:c.2034-3062_2034-3059dup
ORC3 transcript variant X2	XM_017010633.3:c.2031-3071=	XM_017010633.3:c.2031-3062_2031-3059del	XM_017010633.3:c.2031-3061_2031-3059del	XM_017010633.3:c.2031-3060_2031-3059del	XM_017010633.3:c.2031-3059del	XM_017010633.3:c.2031-3059dup	XM_017010633.3:c.2031-3060_2031-3059dup	XM_017010633.3:c.2031-3061_2031-3059dup	XM_017010633.3:c.2031-3062_2031-3059dup
ORC3 transcript variant X9	XM_047418550.1:c.1917-3071=	XM_047418550.1:c.1917-3062_1917-3059del	XM_047418550.1:c.1917-3061_1917-3059del	XM_047418550.1:c.1917-3060_1917-3059del	XM_047418550.1:c.1917-3059del	XM_047418550.1:c.1917-3059dup	XM_047418550.1:c.1917-3060_1917-3059dup	XM_047418550.1:c.1917-3061_1917-3059dup	XM_047418550.1:c.1917-3062_1917-3059dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

23 SubSNP, 14 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HGSV	ss81913106	Dec 14, 2007 (129)
2	SWEGEN	ss2999499402	Nov 08, 2017 (151)
3	EVA_DECODE	ss3717716942	Jul 13, 2019 (153)
4	EVA_DECODE	ss3717716944	Jul 13, 2019 (153)
5	EVA_DECODE	ss3717716945	Jul 13, 2019 (153)
6	EVA_DECODE	ss3717716946	Jul 13, 2019 (153)
7	ACPOP	ss3733735320	Jul 13, 2019 (153)
8	EVA	ss3830056692	Apr 26, 2020 (154)
9	KOGIC	ss3959535440	Apr 26, 2020 (154)
10	KOGIC	ss3959535441	Apr 26, 2020 (154)
11	GNOMAD	ss4146306943	Apr 26, 2021 (155)
12	GNOMAD	ss4146306948	Apr 26, 2021 (155)
13	GNOMAD	ss4146306949	Apr 26, 2021 (155)
14	GNOMAD	ss4146306959	Apr 26, 2021 (155)
15	GNOMAD	ss4146306960	Apr 26, 2021 (155)
16	GNOMAD	ss4146306961	Apr 26, 2021 (155)
17	TOMMO_GENOMICS	ss5178658230	Apr 26, 2021 (155)
18	TOMMO_GENOMICS	ss5178658231	Apr 26, 2021 (155)
19	HUGCELL_USP	ss5466894197	Oct 14, 2022 (156)
20	HUGCELL_USP	ss5466894198	Oct 14, 2022 (156)
21	TOMMO_GENOMICS	ss5717170006	Oct 14, 2022 (156)
22	TOMMO_GENOMICS	ss5717170008	Oct 14, 2022 (156)
23	YY_MCH	ss5807709034	Oct 14, 2022 (156)
24	gnomAD - Genomes Submission ignored due to conflicting rows: Row 232739136 (NC_000006.12:87674642::T 3320/129184) Row 232739141 (NC_000006.12:87674642::TT 42/129206) Row 232739142 (NC_000006.12:87674642::TTT 1/129204)...	-	Apr 26, 2021 (155)
25	gnomAD - Genomes Submission ignored due to conflicting rows: Row 232739136 (NC_000006.12:87674642::T 3320/129184) Row 232739141 (NC_000006.12:87674642::TT 42/129206) Row 232739142 (NC_000006.12:87674642::TTT 1/129204)...	-	Apr 26, 2021 (155)
26	gnomAD - Genomes Submission ignored due to conflicting rows: Row 232739136 (NC_000006.12:87674642::T 3320/129184) Row 232739141 (NC_000006.12:87674642::TT 42/129206) Row 232739142 (NC_000006.12:87674642::TTT 1/129204)...	-	Apr 26, 2021 (155)
27	gnomAD - Genomes Submission ignored due to conflicting rows: Row 232739136 (NC_000006.12:87674642::T 3320/129184) Row 232739141 (NC_000006.12:87674642::TT 42/129206) Row 232739142 (NC_000006.12:87674642::TTT 1/129204)...	-	Apr 26, 2021 (155)
28	gnomAD - Genomes Submission ignored due to conflicting rows: Row 232739136 (NC_000006.12:87674642::T 3320/129184) Row 232739141 (NC_000006.12:87674642::TT 42/129206) Row 232739142 (NC_000006.12:87674642::TTT 1/129204)...	-	Apr 26, 2021 (155)
29	gnomAD - Genomes Submission ignored due to conflicting rows: Row 232739136 (NC_000006.12:87674642::T 3320/129184) Row 232739141 (NC_000006.12:87674642::TT 42/129206) Row 232739142 (NC_000006.12:87674642::TTT 1/129204)...	-	Apr 26, 2021 (155)
30	Korean Genome Project Submission ignored due to conflicting rows: Row 15913441 (NC_000006.12:87674642:T: 31/1806) Row 15913442 (NC_000006.12:87674643::T 49/1806)	-	Apr 26, 2020 (154)
31	Korean Genome Project Submission ignored due to conflicting rows: Row 15913441 (NC_000006.12:87674642:T: 31/1806) Row 15913442 (NC_000006.12:87674643::T 49/1806)	-	Apr 26, 2020 (154)
32	Northern Sweden	NC_000006.11 - 88384361	Jul 13, 2019 (153)
33	8.3KJPN Submission ignored due to conflicting rows: Row 36627537 (NC_000006.11:88384360:T: 21/16752) Row 36627538 (NC_000006.11:88384360::T 108/16752)	-	Apr 26, 2021 (155)
34	8.3KJPN Submission ignored due to conflicting rows: Row 36627537 (NC_000006.11:88384360:T: 21/16752) Row 36627538 (NC_000006.11:88384360::T 108/16752)	-	Apr 26, 2021 (155)
35	14KJPN Submission ignored due to conflicting rows: Row 51007110 (NC_000006.12:87674642:T: 14/28252) Row 51007112 (NC_000006.12:87674642::T 201/28252)	-	Oct 14, 2022 (156)
36	14KJPN Submission ignored due to conflicting rows: Row 51007110 (NC_000006.12:87674642:T: 14/28252) Row 51007112 (NC_000006.12:87674642::T 201/28252)	-	Oct 14, 2022 (156)
37	ALFA	NC_000006.12 - 87674643	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTT	(self)
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTT	(self)
ss3717716942, ss4146306961	NC_000006.12:87674642:TT:	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss81913106	NC_000006.9:88441091:T:	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss5178658230	NC_000006.11:88384360:T:	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3959535440, ss4146306960, ss5466894197, ss5717170006	NC_000006.12:87674642:T:	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss3717716944	NC_000006.12:87674643:T:	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
7020185, ss2999499402, ss3733735320, ss3830056692, ss5178658231	NC_000006.11:88384360::T	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4146306943, ss5466894198, ss5717170008, ss5807709034	NC_000006.12:87674642::T	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3959535441	NC_000006.12:87674643::T	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3717716945	NC_000006.12:87674644::T	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4146306948	NC_000006.12:87674642::TT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3717716946	NC_000006.12:87674644::TT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss4146306949	NC_000006.12:87674642::TTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss4146306959	NC_000006.12:87674642::TTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
6710747049	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)

Removed from this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Destination RSIDs
ss2454629167	NC_000006.11:88384360::TT	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
ss3504370258	NC_000006.12:87674642:TTT:	NC_000006.12:87674642:TTTTTTTTTTTT… NC_000006.12:87674642:TTTTTTTTTTTTT:TTTTTTTTTT

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs57399681

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs57399681