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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1486886787

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr10:122397964 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
A>G
Variation Type
SNV Single Nucleotide Variation
Frequency
G=0.000008 (2/264690, TOPMED)
G=0.000004 (1/251100, GnomAD_exome)
G=0.000021 (3/140172, GnomAD) (+ 1 more)
G=0.00000 (0/14050, ALFA)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
PLEKHA1 : Missense Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 14050 A=1.00000 G=0.00000 1.0 0.0 0.0 N/A
European Sub 9690 A=1.0000 G=0.0000 1.0 0.0 0.0 N/A
African Sub 2898 A=1.0000 G=0.0000 1.0 0.0 0.0 N/A
African Others Sub 114 A=1.000 G=0.000 1.0 0.0 0.0 N/A
African American Sub 2784 A=1.0000 G=0.0000 1.0 0.0 0.0 N/A
Asian Sub 112 A=1.000 G=0.000 1.0 0.0 0.0 N/A
East Asian Sub 86 A=1.00 G=0.00 1.0 0.0 0.0 N/A
Other Asian Sub 26 A=1.00 G=0.00 1.0 0.0 0.0 N/A
Latin American 1 Sub 146 A=1.000 G=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 610 A=1.000 G=0.000 1.0 0.0 0.0 N/A
South Asian Sub 98 A=1.00 G=0.00 1.0 0.0 0.0 N/A
Other Sub 496 A=1.000 G=0.000 1.0 0.0 0.0 N/A


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 A=0.999992 G=0.000008
gnomAD - Exomes Global Study-wide 251100 A=0.999996 G=0.000004
gnomAD - Exomes European Sub 135136 A=0.999993 G=0.000007
gnomAD - Exomes Asian Sub 48978 A=1.00000 G=0.00000
gnomAD - Exomes American Sub 34544 A=1.00000 G=0.00000
gnomAD - Exomes African Sub 16246 A=1.00000 G=0.00000
gnomAD - Exomes Ashkenazi Jewish Sub 10076 A=1.00000 G=0.00000
gnomAD - Exomes Other Sub 6120 A=1.0000 G=0.0000
gnomAD - Genomes Global Study-wide 140172 A=0.999979 G=0.000021
gnomAD - Genomes European Sub 75892 A=0.99997 G=0.00003
gnomAD - Genomes African Sub 42034 A=0.99998 G=0.00002
gnomAD - Genomes American Sub 13642 A=1.00000 G=0.00000
gnomAD - Genomes Ashkenazi Jewish Sub 3318 A=1.0000 G=0.0000
gnomAD - Genomes East Asian Sub 3134 A=1.0000 G=0.0000
gnomAD - Genomes Other Sub 2152 A=1.0000 G=0.0000
Allele Frequency Aggregator Total Global 14050 A=1.00000 G=0.00000
Allele Frequency Aggregator European Sub 9690 A=1.0000 G=0.0000
Allele Frequency Aggregator African Sub 2898 A=1.0000 G=0.0000
Allele Frequency Aggregator Latin American 2 Sub 610 A=1.000 G=0.000
Allele Frequency Aggregator Other Sub 496 A=1.000 G=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 A=1.000 G=0.000
Allele Frequency Aggregator Asian Sub 112 A=1.000 G=0.000
Allele Frequency Aggregator South Asian Sub 98 A=1.00 G=0.00
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 10 NC_000010.11:g.122397964A>G
GRCh37.p13 chr 10 NC_000010.10:g.124157480A>G
PLEKHA1 RefSeqGene NG_027823.1:g.28387A>G
Gene: PLEKHA1, pleckstrin homology domain containing A1 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
PLEKHA1 transcript variant 4 NM_001330178.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001317107.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 14 NM_001377242.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364171.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 28 NM_001377256.1:c.62A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 12 NP_001364185.1:p.Tyr21Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 20 NM_001377248.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 6 NP_001364177.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 24 NM_001377252.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364181.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 1 NM_021622.5:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_067635.2:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 17 NM_001377245.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364174.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 3 NM_001195608.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001182537.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 23 NM_001377251.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 9 NP_001364180.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 18 NM_001377246.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364175.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 29 NM_001377257.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 13 NP_001364186.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 22 NM_001377250.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 8 NP_001364179.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 21 NM_001377249.1:c.133A>G T [ACA] > A [GCA] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 7 NP_001364178.1:p.Thr45Ala T (Thr) > A (Ala) Missense Variant
PLEKHA1 transcript variant 30 NM_001377258.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 14 NP_001364187.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 12 NM_001377240.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364169.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 26 NM_001377254.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364183.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 16 NM_001377244.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364173.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 19 NM_001377247.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 5 NP_001364176.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 5 NM_001377230.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364159.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 25 NM_001377253.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364182.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 7 NM_001377232.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364161.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 8 NM_001377234.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364163.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 11 NM_001377238.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364167.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 15 NM_001377243.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364172.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 13 NM_001377241.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364170.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 27 NM_001377255.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 11 NP_001364184.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 10 NM_001377237.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364166.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 6 NM_001377231.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364160.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 9 NM_001377235.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364164.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 2 NM_001001974.4:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001001974.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant 34 NR_165164.1:n.377A>G N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 35 NR_165165.1:n.307A>G N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 32 NR_165161.1:n.377A>G N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 33 NR_165162.1:n.377A>G N/A Non Coding Transcript Variant
PLEKHA1 transcript variant 31 NR_165160.1:n.307A>G N/A Non Coding Transcript Variant
PLEKHA1 transcript variant X1 XM_017016478.3:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_016871967.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X2 XM_011540018.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538320.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X3 XM_011540017.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538319.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X4 XM_011540021.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538323.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X5 XM_024448109.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303877.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X6 XM_047425598.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281554.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X7 XM_047425599.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281555.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X8 XM_024448108.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303876.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X9 XM_011540019.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538321.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X10 XM_024448110.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303878.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X11 XM_011540024.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538326.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X12 XM_011540022.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538324.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X13 XM_024448107.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303875.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X14 XM_047425600.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281556.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X15 XM_047425602.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281558.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X16 XM_017016479.3:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X2 XP_016871968.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X17 XM_047425603.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281559.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X18 XM_024448113.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303881.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X19 XM_017016482.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_016871971.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X20 XM_047425604.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281560.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X21 XM_047425605.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281561.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X22 XM_024448114.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303882.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X23 XM_047425606.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281562.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X24 XM_017016484.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871973.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X25 XM_017016483.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871972.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X26 XM_047425607.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281563.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X27 XM_047425608.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281564.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X28 XM_047425609.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281565.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X29 XM_047425610.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281566.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X30 XM_047425611.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281567.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X31 XM_017016487.2:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X5 XP_016871976.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X32 XM_047425612.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281568.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
PLEKHA1 transcript variant X33 XM_047425613.1:c.188A>G Y [TAC] > C [TGC] Coding Sequence Variant
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281569.1:p.Tyr63Cys Y (Tyr) > C (Cys) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement A= G
GRCh38.p14 chr 10 NC_000010.11:g.122397964= NC_000010.11:g.122397964A>G
GRCh37.p13 chr 10 NC_000010.10:g.124157480= NC_000010.10:g.124157480A>G
PLEKHA1 RefSeqGene NG_027823.1:g.28387= NG_027823.1:g.28387A>G
PLEKHA1 transcript variant 1 NM_021622.4:c.188= NM_021622.4:c.188A>G
PLEKHA1 transcript variant 1 NM_021622.5:c.188= NM_021622.5:c.188A>G
PLEKHA1 transcript variant 2 NM_001001974.2:c.188= NM_001001974.2:c.188A>G
PLEKHA1 transcript variant 2 NM_001001974.4:c.188= NM_001001974.4:c.188A>G
PLEKHA1 transcript variant 2 NM_001001974.3:c.188= NM_001001974.3:c.188A>G
PLEKHA1 transcript variant 3 NM_001195608.1:c.188= NM_001195608.1:c.188A>G
PLEKHA1 transcript variant 3 NM_001195608.2:c.188= NM_001195608.2:c.188A>G
PLEKHA1 transcript variant X1 XM_017016478.3:c.188= XM_017016478.3:c.188A>G
PLEKHA1 transcript variant X1 XM_017016478.2:c.188= XM_017016478.2:c.188A>G
PLEKHA1 transcript variant X1 XM_017016478.1:c.188= XM_017016478.1:c.188A>G
PLEKHA1 transcript variant X16 XM_017016479.3:c.188= XM_017016479.3:c.188A>G
PLEKHA1 transcript variant X12 XM_017016479.2:c.188= XM_017016479.2:c.188A>G
PLEKHA1 transcript variant X8 XM_017016479.1:c.188= XM_017016479.1:c.188A>G
PLEKHA1 transcript variant X18 XM_024448113.2:c.188= XM_024448113.2:c.188A>G
PLEKHA1 transcript variant X18 XM_024448113.1:c.188= XM_024448113.1:c.188A>G
PLEKHA1 transcript variant X9 XM_011540019.2:c.188= XM_011540019.2:c.188A>G
PLEKHA1 transcript variant X5 XM_011540019.1:c.188= XM_011540019.1:c.188A>G
PLEKHA1 transcript variant X11 XM_011540024.2:c.188= XM_011540024.2:c.188A>G
PLEKHA1 transcript variant X11 XM_011540024.1:c.188= XM_011540024.1:c.188A>G
PLEKHA1 transcript variant X13 XM_024448107.2:c.188= XM_024448107.2:c.188A>G
PLEKHA1 transcript variant X4 XM_024448107.1:c.188= XM_024448107.1:c.188A>G
PLEKHA1 transcript variant X8 XM_024448108.2:c.188= XM_024448108.2:c.188A>G
PLEKHA1 transcript variant X6 XM_024448108.1:c.188= XM_024448108.1:c.188A>G
PLEKHA1 transcript variant X2 XM_011540018.2:c.188= XM_011540018.2:c.188A>G
PLEKHA1 transcript variant X3 XM_011540018.1:c.188= XM_011540018.1:c.188A>G
PLEKHA1 transcript variant X10 XM_024448110.2:c.188= XM_024448110.2:c.188A>G
PLEKHA1 transcript variant X10 XM_024448110.1:c.188= XM_024448110.1:c.188A>G
PLEKHA1 transcript variant X3 XM_011540017.2:c.188= XM_011540017.2:c.188A>G
PLEKHA1 transcript variant X2 XM_011540017.1:c.188= XM_011540017.1:c.188A>G
PLEKHA1 transcript variant X12 XM_011540022.2:c.188= XM_011540022.2:c.188A>G
PLEKHA1 transcript variant X9 XM_011540022.1:c.188= XM_011540022.1:c.188A>G
PLEKHA1 transcript variant X25 XM_017016483.2:c.188= XM_017016483.2:c.188A>G
PLEKHA1 transcript variant X22 XM_017016483.1:c.188= XM_017016483.1:c.188A>G
PLEKHA1 transcript variant X24 XM_017016484.2:c.188= XM_017016484.2:c.188A>G
PLEKHA1 transcript variant X23 XM_017016484.1:c.188= XM_017016484.1:c.188A>G
PLEKHA1 transcript variant X31 XM_017016487.2:c.188= XM_017016487.2:c.188A>G
PLEKHA1 transcript variant X26 XM_017016487.1:c.188= XM_017016487.1:c.188A>G
PLEKHA1 transcript variant X22 XM_024448114.2:c.188= XM_024448114.2:c.188A>G
PLEKHA1 transcript variant X20 XM_024448114.1:c.188= XM_024448114.1:c.188A>G
PLEKHA1 transcript variant X5 XM_024448109.2:c.188= XM_024448109.2:c.188A>G
PLEKHA1 transcript variant X8 XM_024448109.1:c.188= XM_024448109.1:c.188A>G
PLEKHA1 transcript variant X19 XM_017016482.2:c.188= XM_017016482.2:c.188A>G
PLEKHA1 transcript variant X19 XM_017016482.1:c.188= XM_017016482.1:c.188A>G
PLEKHA1 transcript variant X4 XM_011540021.2:c.188= XM_011540021.2:c.188A>G
PLEKHA1 transcript variant X7 XM_011540021.1:c.188= XM_011540021.1:c.188A>G
PLEKHA1 transcript variant 4 NM_001330178.2:c.188= NM_001330178.2:c.188A>G
PLEKHA1 transcript variant 4 NM_001330178.1:c.188= NM_001330178.1:c.188A>G
PLEKHA1 transcript variant 6 NM_001377231.1:c.188= NM_001377231.1:c.188A>G
PLEKHA1 transcript variant 14 NM_001377242.1:c.188= NM_001377242.1:c.188A>G
PLEKHA1 transcript variant X15 XM_047425602.1:c.188= XM_047425602.1:c.188A>G
PLEKHA1 transcript variant X17 XM_047425603.1:c.188= XM_047425603.1:c.188A>G
PLEKHA1 transcript variant X26 XM_047425607.1:c.188= XM_047425607.1:c.188A>G
PLEKHA1 transcript variant X20 XM_047425604.1:c.188= XM_047425604.1:c.188A>G
PLEKHA1 transcript variant 15 NM_001377243.1:c.188= NM_001377243.1:c.188A>G
PLEKHA1 transcript variant X27 XM_047425608.1:c.188= XM_047425608.1:c.188A>G
PLEKHA1 transcript variant 7 NM_001377232.1:c.188= NM_001377232.1:c.188A>G
PLEKHA1 transcript variant 8 NM_001377234.1:c.188= NM_001377234.1:c.188A>G
PLEKHA1 transcript variant 16 NM_001377244.1:c.188= NM_001377244.1:c.188A>G
PLEKHA1 transcript variant X7 XM_047425599.1:c.188= XM_047425599.1:c.188A>G
PLEKHA1 transcript variant X29 XM_047425610.1:c.188= XM_047425610.1:c.188A>G
PLEKHA1 transcript variant X6 XM_047425598.1:c.188= XM_047425598.1:c.188A>G
PLEKHA1 transcript variant X32 XM_047425612.1:c.188= XM_047425612.1:c.188A>G
PLEKHA1 transcript variant X14 XM_047425600.1:c.188= XM_047425600.1:c.188A>G
PLEKHA1 transcript variant 9 NM_001377235.1:c.188= NM_001377235.1:c.188A>G
PLEKHA1 transcript variant 11 NM_001377238.1:c.188= NM_001377238.1:c.188A>G
PLEKHA1 transcript variant X30 XM_047425611.1:c.188= XM_047425611.1:c.188A>G
PLEKHA1 transcript variant X33 XM_047425613.1:c.188= XM_047425613.1:c.188A>G
PLEKHA1 transcript variant 31 NR_165160.1:n.307= NR_165160.1:n.307A>G
PLEKHA1 transcript variant 26 NM_001377254.1:c.188= NM_001377254.1:c.188A>G
PLEKHA1 transcript variant 10 NM_001377237.1:c.188= NM_001377237.1:c.188A>G
PLEKHA1 transcript variant 18 NM_001377246.1:c.188= NM_001377246.1:c.188A>G
PLEKHA1 transcript variant X28 XM_047425609.1:c.188= XM_047425609.1:c.188A>G
PLEKHA1 transcript variant 20 NM_001377248.1:c.188= NM_001377248.1:c.188A>G
PLEKHA1 transcript variant X23 XM_047425606.1:c.188= XM_047425606.1:c.188A>G
PLEKHA1 transcript variant 35 NR_165165.1:n.307= NR_165165.1:n.307A>G
PLEKHA1 transcript variant X21 XM_047425605.1:c.188= XM_047425605.1:c.188A>G
PLEKHA1 transcript variant 32 NR_165161.1:n.377= NR_165161.1:n.377A>G
PLEKHA1 transcript variant 12 NM_001377240.1:c.188= NM_001377240.1:c.188A>G
PLEKHA1 transcript variant 23 NM_001377251.1:c.188= NM_001377251.1:c.188A>G
PLEKHA1 transcript variant 17 NM_001377245.1:c.188= NM_001377245.1:c.188A>G
PLEKHA1 transcript variant 5 NM_001377230.1:c.188= NM_001377230.1:c.188A>G
PLEKHA1 transcript variant 21 NM_001377249.1:c.133= NM_001377249.1:c.133A>G
PLEKHA1 transcript variant 28 NM_001377256.1:c.62= NM_001377256.1:c.62A>G
PLEKHA1 transcript variant 13 NM_001377241.1:c.188= NM_001377241.1:c.188A>G
PLEKHA1 transcript variant 19 NM_001377247.1:c.188= NM_001377247.1:c.188A>G
PLEKHA1 transcript variant 22 NM_001377250.1:c.188= NM_001377250.1:c.188A>G
PLEKHA1 transcript variant 34 NR_165164.1:n.377= NR_165164.1:n.377A>G
PLEKHA1 transcript variant 27 NM_001377255.1:c.188= NM_001377255.1:c.188A>G
PLEKHA1 transcript variant 33 NR_165162.1:n.377= NR_165162.1:n.377A>G
PLEKHA1 transcript variant 29 NM_001377257.1:c.188= NM_001377257.1:c.188A>G
PLEKHA1 transcript variant 30 NM_001377258.1:c.188= NM_001377258.1:c.188A>G
PLEKHA1 transcript variant 25 NM_001377253.1:c.188= NM_001377253.1:c.188A>G
PLEKHA1 transcript variant 24 NM_001377252.1:c.188= NM_001377252.1:c.188A>G
pleckstrin homology domain-containing family A member 1 isoform 1 NP_067635.2:p.Tyr63= NP_067635.2:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001001974.1:p.Tyr63= NP_001001974.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001182537.1:p.Tyr63= NP_001182537.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_016871967.1:p.Tyr63= XP_016871967.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X2 XP_016871968.1:p.Tyr63= XP_016871968.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303881.1:p.Tyr63= XP_024303881.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538321.1:p.Tyr63= XP_011538321.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538326.1:p.Tyr63= XP_011538326.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303875.1:p.Tyr63= XP_024303875.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303876.1:p.Tyr63= XP_024303876.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538320.1:p.Tyr63= XP_011538320.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303878.1:p.Tyr63= XP_024303878.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538319.1:p.Tyr63= XP_011538319.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538324.1:p.Tyr63= XP_011538324.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871972.1:p.Tyr63= XP_016871972.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X4 XP_016871973.1:p.Tyr63= XP_016871973.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X5 XP_016871976.1:p.Tyr63= XP_016871976.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X3 XP_024303882.1:p.Tyr63= XP_024303882.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_024303877.1:p.Tyr63= XP_024303877.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X3 XP_016871971.1:p.Tyr63= XP_016871971.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_011538323.1:p.Tyr63= XP_011538323.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001317107.1:p.Tyr63= NP_001317107.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364160.1:p.Tyr63= NP_001364160.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364171.1:p.Tyr63= NP_001364171.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281558.1:p.Tyr63= XP_047281558.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281559.1:p.Tyr63= XP_047281559.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281563.1:p.Tyr63= XP_047281563.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281560.1:p.Tyr63= XP_047281560.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364172.1:p.Tyr63= NP_001364172.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281564.1:p.Tyr63= XP_047281564.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364161.1:p.Tyr63= NP_001364161.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364163.1:p.Tyr63= NP_001364163.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364173.1:p.Tyr63= NP_001364173.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281555.1:p.Tyr63= XP_047281555.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281566.1:p.Tyr63= XP_047281566.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281554.1:p.Tyr63= XP_047281554.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281568.1:p.Tyr63= XP_047281568.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X1 XP_047281556.1:p.Tyr63= XP_047281556.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364164.1:p.Tyr63= NP_001364164.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364167.1:p.Tyr63= NP_001364167.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281567.1:p.Tyr63= XP_047281567.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X5 XP_047281569.1:p.Tyr63= XP_047281569.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364183.1:p.Tyr63= NP_001364183.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 2 NP_001364166.1:p.Tyr63= NP_001364166.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364175.1:p.Tyr63= NP_001364175.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X4 XP_047281565.1:p.Tyr63= XP_047281565.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 6 NP_001364177.1:p.Tyr63= NP_001364177.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281562.1:p.Tyr63= XP_047281562.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform X3 XP_047281561.1:p.Tyr63= XP_047281561.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364169.1:p.Tyr63= NP_001364169.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 9 NP_001364180.1:p.Tyr63= NP_001364180.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 4 NP_001364174.1:p.Tyr63= NP_001364174.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 1 NP_001364159.1:p.Tyr63= NP_001364159.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 7 NP_001364178.1:p.Thr45= NP_001364178.1:p.Thr45Ala
pleckstrin homology domain-containing family A member 1 isoform 12 NP_001364185.1:p.Tyr21= NP_001364185.1:p.Tyr21Cys
pleckstrin homology domain-containing family A member 1 isoform 3 NP_001364170.1:p.Tyr63= NP_001364170.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 5 NP_001364176.1:p.Tyr63= NP_001364176.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 8 NP_001364179.1:p.Tyr63= NP_001364179.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 11 NP_001364184.1:p.Tyr63= NP_001364184.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 13 NP_001364186.1:p.Tyr63= NP_001364186.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 14 NP_001364187.1:p.Tyr63= NP_001364187.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364182.1:p.Tyr63= NP_001364182.1:p.Tyr63Cys
pleckstrin homology domain-containing family A member 1 isoform 10 NP_001364181.1:p.Tyr63= NP_001364181.1:p.Tyr63Cys
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

4 SubSNP, 4 Frequency submissions
No Submitter Submission ID Date (Build)
1 GNOMAD ss2738578092 Nov 08, 2017 (151)
2 GNOMAD ss2748487293 Nov 08, 2017 (151)
3 GNOMAD ss2894339661 Nov 08, 2017 (151)
4 TOPMED ss4869393624 Apr 27, 2021 (155)
5 gnomAD - Genomes NC_000010.11 - 122397964 Apr 27, 2021 (155)
6 gnomAD - Exomes NC_000010.10 - 124157480 Jul 13, 2019 (153)
7 TopMed NC_000010.11 - 122397964 Apr 27, 2021 (155)
8 ALFA NC_000010.11 - 122397964 Apr 27, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
7782694, ss2738578092, ss2748487293, ss2894339661 NC_000010.10:124157479:A:G NC_000010.11:122397963:A:G (self)
366393104, 84939279, 8483585207, ss4869393624 NC_000010.11:122397963:A:G NC_000010.11:122397963:A:G (self)
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Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs1486886787

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d