SNP Links for Gene (Select 3903) - SNP

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Select item 14915276571.

rs1491527657 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAAA [Show Flanks]
Chromosome:: 19:54353162 (GRCh38)
19:54864772 (GRCh37)
Canonical SPDI:: NC_000019.10:54353162:AAA:AAAGAAA
Gene:: LAIR1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAGAAA=0.00017/2 (ALFA)
AAAG=0.00007/2 (TOMMO)
AAAG=0.0047/20 (GnomAD)
AAAG=0.02005/15 (Korea1K)
HGVS:: NC_000019.10:g.54353165_54353166insGAAA, NW_004166865.1:g.327532_327533insGAAA, NW_003571061.2:g.335128_335131dup, NW_003571061.1:g.335127_335130dup, NW_003571055.2:g.334572_334575dup, NW_003571055.1:g.334571_334574dup, NT_187693.1:g.335889_335892dup, NC_000019.9:g.54864775_54864778dup, NM_002287.6:c.*2105_*2106insCTTT, NM_021706.5:c.*2105_*2106insCTTT, NR_110280.3:n.3337_3338insCTTT, NM_001289026.3:c.*2105_*2106insCTTT, NM_001289027.3:c.*2105_*2106insCTTT, NM_001289025.3:c.*2105_*2106insCTTT, NM_001289023.3:c.*2105_*2106insCTTT, NR_110279.3:n.3002_3003insCTTT, XM_047438810.1:c.*2105_*2106insCTTT, XM_047438812.1:c.*2105_*2106insCTTT, XM_047438811.1:c.*2105_*2106insCTTT

Select item 14915203812.

rs1491520381 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 19:54358386 (GRCh38)
19:54869995 (GRCh37)
Canonical SPDI:: NC_000019.10:54358385:AA:
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000625/4 (1000Genomes)
-=0.001574/77 (GnomAD)
HGVS:: NC_000019.10:g.54358386_54358387del, NW_004166865.1:g.332753_332754del, NW_003571061.2:g.340348_340349del, NW_003571061.1:g.340347_340348del, NW_003571055.2:g.339792_339793del, NW_003571055.1:g.339791_339792del, NT_187693.1:g.341109_341110del, NC_000019.9:g.54869995_54869996del, NW_003571060.1:g.263036_263037del, XM_017026803.3:c.*84_*85del

Select item 14914873873.

rs1491487387 [Homo sapiens]

Variant type:: INS
Alleles:: ->T,TAATATATATAT,TAATATATATATATAATATATATAT,TAT,TC [Show Flanks]
Chromosome:: 19:54358397 (GRCh38)
19:54869986 (GRCh37)
Canonical SPDI:: NC_000019.10:54358397::T,NC_000019.10:54358397::TAATATATATAT,NC_000019.10:54358397::TAATATATATATATAATATATATAT,NC_000019.10:54358397::TAT,NC_000019.10:54358397::TC
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAATATATATAT=0./0 (ALFA)
T=0.000061/8 (GnomAD)
T=0.000071/2 (TOMMO)
HGVS:: NC_000019.10:g.54358397_54358398insT, NC_000019.10:g.54358397_54358398insTAATATATATAT, NC_000019.10:g.54358397_54358398insTAATATATATATATAATATATATAT, NC_000019.10:g.54358397_54358398insTAT, NC_000019.10:g.54358397_54358398insTC, NW_004166865.1:g.332764_332765insT, NW_004166865.1:g.332764_332765insTAATATATATAT, NW_004166865.1:g.332764_332765insTAATATATATATATAATATATATAT, NW_004166865.1:g.332764_332765insTAT, NW_004166865.1:g.332764_332765insTC, NW_003571061.2:g.340358dup, NW_003571061.2:g.340347_340358dup, NW_003571061.2:g.340339_340358TA[5]AT[5]TAATATATATATATAATATATATAT[1], NW_003571061.2:g.340356_340358dup, NW_003571061.2:g.340358_340359insTC, NW_003571055.2:g.339802dup, NW_003571055.2:g.339791_339802dup, NW_003571055.2:g.339783_339802TA[5]AT[5]TAATATATATATATAATATATATAT[1], NW_003571055.2:g.339800_339802dup, NW_003571055.2:g.339802_339803insTC, NT_187693.1:g.341119dup, NT_187693.1:g.341108_341119dup, NT_187693.1:g.341100_341119TA[5]AT[5]TAATATATATATATAATATATATAT[1], NT_187693.1:g.341117_341119dup, NT_187693.1:g.341119_341120insTC, NW_003571060.1:g.263046dup, NW_003571060.1:g.263035_263046dup, NW_003571060.1:g.263027_263046TA[5]AT[5]TAATATATATATATAATATATATAT[1], NW_003571060.1:g.263044_263046dup, NW_003571060.1:g.263046_263047insTC, NC_000019.9:g.54870005dup, NC_000019.9:g.54869994_54870005dup, NC_000019.9:g.54869986_54870005TA[5]AT[5]TAATATATATATATAATATATATAT[1], NC_000019.9:g.54870003_54870005dup, NC_000019.9:g.54870005_54870006insTC, XM_017026803.3:c.*73_*74insA, XM_017026803.3:c.*73_*74insATATATATATTA, XM_017026803.3:c.*73_*74insATATATATATTATATATATATATTA, XM_017026803.3:c.*73_*74insATA, XM_017026803.3:c.*73_*74insGA, NW_003571061.1:g.340357dup, NW_003571061.1:g.340346_340357dup, NW_003571061.1:g.340338_340357TA[5]AT[5]TAATATATATATATAATATATATAT[1], NW_003571061.1:g.340355_340357dup, NW_003571061.1:g.340357_340358insTC, NW_003571055.1:g.339801dup, NW_003571055.1:g.339790_339801dup, NW_003571055.1:g.339782_339801TA[5]AT[5]TAATATATATATATAATATATATAT[1], NW_003571055.1:g.339799_339801dup, NW_003571055.1:g.339801_339802insTC

Select item 14914360314.

rs1491436031 has merged into rs148763400 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,A,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA [Show Flanks]
Chromosome:: 19:54353171 (GRCh38)
19:54864784 (GRCh37)
Canonical SPDI:: NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAA,NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000019.10:54353161:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
Gene:: LAIR1 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000019.10:g.54353171_54353176del, NC_000019.10:g.54353172_54353176del, NC_000019.10:g.54353175_54353176del, NC_000019.10:g.54353176del, NC_000019.10:g.54353176dup, NC_000019.10:g.54353175_54353176dup, NC_000019.10:g.54353174_54353176dup, NC_000019.10:g.54353173_54353176dup, NW_004166865.1:g.327538_327543del, NW_004166865.1:g.327539_327543del, NW_004166865.1:g.327542_327543del, NW_004166865.1:g.327543del, NW_004166865.1:g.327543dup, NW_004166865.1:g.327542_327543dup, NW_004166865.1:g.327541_327543dup, NW_004166865.1:g.327540_327543dup, NW_003571061.2:g.335128delinsAA, NW_003571061.2:g.335128_335132del, NW_003571061.2:g.335128_335131del, NW_003571061.2:g.335128del, NW_003571061.2:g.335128G>A, NW_003571061.2:g.335128delinsAAA, NW_003571061.2:g.335128delinsAAAA, NW_003571061.2:g.335128delinsAAAAA, NW_003571061.2:g.335128delinsAAAAAA, NW_003571055.2:g.334572delinsAA, NW_003571055.2:g.334572_334576del, NW_003571055.2:g.334572_334575del, NW_003571055.2:g.334572del, NW_003571055.2:g.334572G>A, NW_003571055.2:g.334572delinsAAA, NW_003571055.2:g.334572delinsAAAA, NW_003571055.2:g.334572delinsAAAAA, NW_003571055.2:g.334572delinsAAAAAA, NT_187693.1:g.335889delinsAA, NT_187693.1:g.335889_335893del, NT_187693.1:g.335889_335892del, NT_187693.1:g.335889del, NT_187693.1:g.335889G>A, NT_187693.1:g.335889delinsAAA, NT_187693.1:g.335889delinsAAAA, NT_187693.1:g.335889delinsAAAAA, NT_187693.1:g.335889delinsAAAAAA, NC_000019.9:g.54864775delinsAA, NC_000019.9:g.54864775_54864779del, NC_000019.9:g.54864775_54864778del, NC_000019.9:g.54864775del, NC_000019.9:g.54864775G>A, NC_000019.9:g.54864775delinsAAA, NC_000019.9:g.54864775delinsAAAA, NC_000019.9:g.54864775delinsAAAAA, NC_000019.9:g.54864775delinsAAAAAA, NM_002287.6:c.*2101_*2106del, NM_002287.6:c.*2102_*2106del, NM_002287.6:c.*2105_*2106del, NM_002287.6:c.*2106del, NM_002287.6:c.*2106dup, NM_002287.6:c.*2105_*2106dup, NM_002287.6:c.*2104_*2106dup, NM_002287.6:c.*2103_*2106dup, NM_001289027.3:c.*2101_*2106del, NM_001289027.3:c.*2102_*2106del, NM_001289027.3:c.*2105_*2106del, NM_001289027.3:c.*2106del, NM_001289027.3:c.*2106dup, NM_001289027.3:c.*2105_*2106dup, NM_001289027.3:c.*2104_*2106dup, NM_001289027.3:c.*2103_*2106dup, NM_001289025.3:c.*2101_*2106del, NM_001289025.3:c.*2102_*2106del, NM_001289025.3:c.*2105_*2106del, NM_001289025.3:c.*2106del, NM_001289025.3:c.*2106dup, NM_001289025.3:c.*2105_*2106dup, NM_001289025.3:c.*2104_*2106dup, NM_001289025.3:c.*2103_*2106dup, NM_001289023.3:c.*2101_*2106del, NM_001289023.3:c.*2102_*2106del, NM_001289023.3:c.*2105_*2106del, NM_001289023.3:c.*2106del, NM_001289023.3:c.*2106dup, NM_001289023.3:c.*2105_*2106dup, NM_001289023.3:c.*2104_*2106dup, NM_001289023.3:c.*2103_*2106dup, NR_110279.3:n.2998_3003del, NR_110279.3:n.2999_3003del, NR_110279.3:n.3002_3003del, NR_110279.3:n.3003del, NR_110279.3:n.3003dup, NR_110279.3:n.3002_3003dup, NR_110279.3:n.3001_3003dup, NR_110279.3:n.3000_3003dup, XM_047438812.1:c.*2101_*2106del, XM_047438812.1:c.*2102_*2106del, XM_047438812.1:c.*2105_*2106del, XM_047438812.1:c.*2106del, XM_047438812.1:c.*2106dup, XM_047438812.1:c.*2105_*2106dup, XM_047438812.1:c.*2104_*2106dup, XM_047438812.1:c.*2103_*2106dup, XM_047438811.1:c.*2101_*2106del, XM_047438811.1:c.*2102_*2106del, XM_047438811.1:c.*2105_*2106del, XM_047438811.1:c.*2106del, XM_047438811.1:c.*2106dup, XM_047438811.1:c.*2105_*2106dup, XM_047438811.1:c.*2104_*2106dup, XM_047438811.1:c.*2103_*2106dup, NM_001289026.3:c.*2101_*2106del, NM_001289026.3:c.*2102_*2106del, NM_001289026.3:c.*2105_*2106del, NM_001289026.3:c.*2106del, NM_001289026.3:c.*2106dup, NM_001289026.3:c.*2105_*2106dup, NM_001289026.3:c.*2104_*2106dup, NM_001289026.3:c.*2103_*2106dup, NM_021706.5:c.*2101_*2106del, NM_021706.5:c.*2102_*2106del, NM_021706.5:c.*2105_*2106del, NM_021706.5:c.*2106del, NM_021706.5:c.*2106dup, NM_021706.5:c.*2105_*2106dup, NM_021706.5:c.*2104_*2106dup, NM_021706.5:c.*2103_*2106dup, NR_110280.3:n.3333_3338del, NR_110280.3:n.3334_3338del, NR_110280.3:n.3337_3338del, NR_110280.3:n.3338del, NR_110280.3:n.3338dup, NR_110280.3:n.3337_3338dup, NR_110280.3:n.3336_3338dup, NR_110280.3:n.3335_3338dup, XM_047438810.1:c.*2101_*2106del, XM_047438810.1:c.*2102_*2106del, XM_047438810.1:c.*2105_*2106del, XM_047438810.1:c.*2106del, XM_047438810.1:c.*2106dup, XM_047438810.1:c.*2105_*2106dup, XM_047438810.1:c.*2104_*2106dup, XM_047438810.1:c.*2103_*2106dup, NW_003571061.1:g.335127delinsAA, NW_003571061.1:g.335127_335131del, NW_003571061.1:g.335127_335130del, NW_003571061.1:g.335127del, NW_003571061.1:g.335127G>A, NW_003571061.1:g.335127delinsAAA, NW_003571061.1:g.335127delinsAAAA, NW_003571061.1:g.335127delinsAAAAA, NW_003571061.1:g.335127delinsAAAAAA, NW_003571055.1:g.334571delinsAA, NW_003571055.1:g.334571_334575del, NW_003571055.1:g.334571_334574del, NW_003571055.1:g.334571del, NW_003571055.1:g.334571G>A, NW_003571055.1:g.334571delinsAAA, NW_003571055.1:g.334571delinsAAAA, NW_003571055.1:g.334571delinsAAAAA, NW_003571055.1:g.334571delinsAAAAAA

Select item 14914270015.

rs1491427001 has merged into rs58531272 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:54353166 (GRCh38)
19:54864775 (GRCh37)
Canonical SPDI:: NC_000019.10:54353165:A:G
Gene:: LAIR1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.402293/4772 (ALFA)
G=0.002063/3 (Korea1K)
G=0.389616/10949 (TOMMO)
G=0.458324/58099 (GnomAD)
HGVS:: NC_000019.10:g.54353166A>G, NW_004166865.1:g.327533A>G, NW_003571061.2:g.335128G>A, NW_003571061.1:g.335127G>A, NW_003571055.2:g.334572G>A, NW_003571055.1:g.334571G>A, NT_187693.1:g.335889G>A, NC_000019.9:g.54864775G>A, NM_002287.6:c.*2102T>C, NM_021706.5:c.*2102T>C, NR_110280.3:n.3334T>C, NM_001289026.3:c.*2102T>C, NM_001289027.3:c.*2102T>C, NM_001289025.3:c.*2102T>C, NM_001289023.3:c.*2102T>C, NR_110279.3:n.2999T>C, XM_047438810.1:c.*2102T>C, XM_047438812.1:c.*2102T>C, XM_047438811.1:c.*2102T>C

Select item 14913974066.

rs1491397406 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 19:54358397 (GRCh38)
19:54870006 (GRCh37)
Canonical SPDI:: NC_000019.10:54358396:AA:
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00003/1 (GnomAD)
HGVS:: NC_000019.10:g.54358397_54358398del, NW_004166865.1:g.332764_332765del, NW_003571061.2:g.340360dup, NW_003571061.2:g.340360del, NW_003571055.2:g.339804dup, NW_003571055.2:g.339804del, NT_187693.1:g.341121dup, NT_187693.1:g.341121del, NW_003571060.1:g.263048dup, NW_003571060.1:g.263048del, NC_000019.9:g.54870007dup, NC_000019.9:g.54870007del, XM_017026803.3:c.*73_*74del, NW_003571061.1:g.340359dup, NW_003571061.1:g.340359del, NW_003571055.1:g.339803dup, NW_003571055.1:g.339803del

Select item 14913755517.

rs1491375551 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 19:54358376 (GRCh38)
19:54869985 (GRCh37)
Canonical SPDI:: NC_000019.10:54358375:TT:
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000024/2 (GnomAD)
HGVS:: NC_000019.10:g.54358376_54358377del, NW_004166865.1:g.332743_332744del, NW_003571061.2:g.340338_340339del, NW_003571061.1:g.340337_340338del, NW_003571055.2:g.339782_339783del, NW_003571055.1:g.339781_339782del, NT_187693.1:g.341099_341100del, NC_000019.9:g.54869985_54869986del, NW_003571060.1:g.263026_263027del, XM_017026803.3:c.*94_*95del

Select item 14912989998.

rs1491298999 has merged into rs1167186423 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATATAT>-,AT,ATAT,ATATATAT [Show Flanks]
Chromosome:: 19:54358406 (GRCh38)
19:54870015 (GRCh37)
Canonical SPDI:: NC_000019.10:54358397:ATATATATATATAT:ATATATAT,NC_000019.10:54358397:ATATATATATATAT:ATATATATAT,NC_000019.10:54358397:ATATATATATATAT:ATATATATATAT,NC_000019.10:54358397:ATATATATATATAT:ATATATATATATATAT
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATAT=0./0 (ALFA)
HGVS:: NC_000019.10:g.54358398AT[4], NC_000019.10:g.54358398AT[5], NC_000019.10:g.54358398AT[6], NC_000019.10:g.54358398AT[8], NW_004166865.1:g.332765AT[4], NW_004166865.1:g.332765AT[5], NW_004166865.1:g.332765AT[6], NW_004166865.1:g.332765AT[8], NW_003571061.2:g.340360AT[7], NW_003571061.2:g.340360AT[4], NW_003571061.2:g.340360AT[5], NW_003571061.2:g.340360AT[8], NW_003571055.2:g.339804AT[7], NW_003571055.2:g.339804AT[4], NW_003571055.2:g.339804AT[5], NW_003571055.2:g.339804AT[8], NT_187693.1:g.341121AT[7], NT_187693.1:g.341121AT[4], NT_187693.1:g.341121AT[5], NT_187693.1:g.341121AT[8], NW_003571060.1:g.263048AT[7], NW_003571060.1:g.263048AT[4], NW_003571060.1:g.263048AT[5], NW_003571060.1:g.263048AT[8], NC_000019.9:g.54870007AT[7], NC_000019.9:g.54870007AT[4], NC_000019.9:g.54870007AT[5], NC_000019.9:g.54870007AT[8], XM_017026803.3:c.*60AT[4], XM_017026803.3:c.*60AT[5], XM_017026803.3:c.*60AT[6], XM_017026803.3:c.*60AT[8], NW_003571061.1:g.340359AT[7], NW_003571061.1:g.340359AT[4], NW_003571061.1:g.340359AT[5], NW_003571061.1:g.340359AT[8], NW_003571055.1:g.339803AT[7], NW_003571055.1:g.339803AT[4], NW_003571055.1:g.339803AT[5], NW_003571055.1:g.339803AT[8]

Select item 14912710759.

rs1491271075 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TATATATAT [Show Flanks]
Chromosome:: 19:54358400 (GRCh38)
19:54870008 (GRCh37)
Canonical SPDI:: NC_000019.10:54358400:TATATATAT:TATATATATTATATATAT
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: TATATATATTATATATAT=0./0 (ALFA)
HGVS:: NC_000019.10:g.54358401_54358409dup, NW_004166865.1:g.332768_332776dup, NW_003571061.2:g.340361_340369dup, NW_003571061.1:g.340360_340368dup, NW_003571055.2:g.339805_339813dup, NW_003571055.1:g.339804_339812dup, NT_187693.1:g.341122_341130dup, NC_000019.9:g.54870008_54870016dup, NW_003571060.1:g.263049_263057dup, XM_017026803.3:c.*62_*70dup

Select item 149123849810.

rs1491238498 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 19:54358411 (GRCh38)
19:54870019 (GRCh37)
Canonical SPDI:: NC_000019.10:54358411::A
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0.0004/2 (ALFA)
HGVS:: NC_000019.10:g.54358411_54358412insA, NW_004166865.1:g.332778_332779insA, NW_003571061.2:g.340371_340372insA, NW_003571061.1:g.340370_340371insA, NW_003571055.2:g.339815_339816insA, NW_003571055.1:g.339814_339815insA, NT_187693.1:g.341132_341133insA, NC_000019.9:g.54870018_54870019insA, NW_003571060.1:g.263059_263060insA, XM_017026803.3:c.*59_*60insT

Select item 149087361311.

rs1490873613 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:54367710 (GRCh38)
19:54879317 (GRCh37)
Canonical SPDI:: NC_000019.10:54367709:C:T
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
HGVS:: NC_000019.10:g.54367710C>T, NW_004166865.1:g.342077C>T, NW_003571061.2:g.349671C>T, NW_003571061.1:g.349670C>T, NW_003571055.2:g.349116C>T, NW_003571055.1:g.349115C>T, NT_187693.1:g.350431C>T, NC_000019.9:g.54879317C>T, NW_003571060.1:g.272361C>T

Select item 149085782712.

rs1490857827 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:54353467 (GRCh38)
19:54865076 (GRCh37)
Canonical SPDI:: NC_000019.10:54353466:C:T
Gene:: LAIR1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.54353467C>T, NW_004166865.1:g.327834C>T, NW_003571061.2:g.335429C>T, NW_003571061.1:g.335428C>T, NW_003571055.2:g.334873C>T, NW_003571055.1:g.334872C>T, NT_187693.1:g.336190C>T, NC_000019.9:g.54865076C>T, NM_002287.6:c.*1801G>A, NM_021706.5:c.*1801G>A, NR_110280.3:n.3033G>A, NM_001289026.3:c.*1801G>A, NM_001289027.3:c.*1801G>A, NM_001289025.3:c.*1801G>A, NM_001289023.3:c.*1801G>A, NR_110279.3:n.2698G>A, XM_047438812.1:c.*1801G>A, XM_047438811.1:c.*1801G>A, XM_047438810.1:c.*1801G>A

Select item 149079681213.

rs1490796812 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:54359939 (GRCh38)
19:54871546 (GRCh37)
Canonical SPDI:: NC_000019.10:54359938:C:T
Gene:: LAIR1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.54359939C>T, NW_004166865.1:g.334306C>T, NW_003571061.2:g.341899C>T, NW_003571061.1:g.341898C>T, NW_003571055.2:g.341343C>T, NW_003571055.1:g.341342C>T, NT_187693.1:g.342660C>T, NC_000019.9:g.54871546C>T, NW_003571060.1:g.264587C>T, NR_110280.2:n.870G>A, NR_110280.3:n.687G>A, NR_110280.1:n.870G>A

Select item 149063212014.

rs1490632120 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:54360317 (GRCh38)
19:54871924 (GRCh37)
Canonical SPDI:: NC_000019.10:54360316:C:T
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.0344/408 (ALFA)
HGVS:: NC_000019.10:g.54360317C>T, NW_004166865.1:g.334684C>T, NW_003571061.2:g.342277T>C, NW_003571061.1:g.342276T>C, NW_003571055.2:g.341721T>C, NW_003571055.1:g.341720T>C, NT_187693.1:g.343038T>C, NC_000019.9:g.54871924T>C, NW_003571060.1:g.264965T>C

Select item 149051042615.

rs1490510426 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:54354112 (GRCh38)
19:54865721 (GRCh37)
Canonical SPDI:: NC_000019.10:54354111:C:T
Gene:: LAIR1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000042/11 (TOPMED)
HGVS:: NC_000019.10:g.54354112C>T, NW_004166865.1:g.328479C>T, NW_003571061.2:g.336074C>T, NW_003571061.1:g.336073C>T, NW_003571055.2:g.335518C>T, NW_003571055.1:g.335517C>T, NT_187693.1:g.336835C>T, NC_000019.9:g.54865721C>T, NW_003571060.1:g.258762C>T, NM_002287.6:c.*1156G>A, NM_002287.5:c.*1156G>A, NM_002287.4:c.*1156G>A, NM_002287.3:c.*1156G>A, NM_021706.5:c.*1156G>A, NM_021706.4:c.*1156G>A, NM_021706.3:c.*1156G>A, NM_021706.2:c.*1156G>A, NM_001289025.2:c.*1156G>A, NM_001289025.3:c.*1156G>A, NM_001289025.1:c.*1156G>A, NM_001289027.3:c.*1156G>A, NM_001289027.2:c.*1156G>A, NM_001289027.1:c.*1156G>A, NM_001289023.3:c.*1156G>A, NM_001289023.2:c.*1156G>A, NM_001289023.1:c.*1156G>A, NR_110279.3:n.2053G>A, NR_110279.2:n.2236G>A, NR_110279.1:n.2236G>A, XM_047438811.1:c.*1156G>A, XM_047438810.1:c.*1156G>A, NR_110280.3:n.2388G>A, NR_110280.2:n.2571G>A, NR_110280.1:n.2571G>A, NM_001289026.3:c.*1156G>A, NM_001289026.2:c.*1156G>A, NM_001289026.1:c.*1156G>A, XM_047438812.1:c.*1156G>A

Select item 149046342816.

rs1490463428 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:54366859 (GRCh38)
19:54878466 (GRCh37)
Canonical SPDI:: NC_000019.10:54366858:G:A
Gene:: LAIR1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.54366859G>A, NW_004166865.1:g.341226G>A, NW_003571061.2:g.348820G>A, NW_003571061.1:g.348819G>A, NW_003571055.2:g.348265G>A, NW_003571055.1:g.348264G>A, NT_187693.1:g.349580G>A, NC_000019.9:g.54878466G>A, NW_003571060.1:g.271510G>A

Select item 149029600517.

rs1490296005 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:54363983 (GRCh38)
19:54875590 (GRCh37)
Canonical SPDI:: NC_000019.10:54363982:T:G
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.54363983T>G, NW_004166865.1:g.338350T>G, NW_003571061.2:g.345944T>G, NW_003571061.1:g.345943T>G, NW_003571055.2:g.345387T>G, NW_003571055.1:g.345386T>G, NT_187693.1:g.346704T>G, NC_000019.9:g.54875590T>G, NW_003571060.1:g.268632T>G

Select item 148987597818.

rs1489875978 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 19:54354083 (GRCh38)
19:54865692 (GRCh37)
Canonical SPDI:: NC_000019.10:54354082:C:G,NC_000019.10:54354082:C:T
Gene:: LAIR1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.54354083C>G, NC_000019.10:g.54354083C>T, NW_004166865.1:g.328450C>G, NW_004166865.1:g.328450C>T, NW_003571061.2:g.336045C>G, NW_003571061.2:g.336045C>T, NW_003571061.1:g.336044C>G, NW_003571061.1:g.336044C>T, NW_003571055.2:g.335489C>G, NW_003571055.2:g.335489C>T, NW_003571055.1:g.335488C>G, NW_003571055.1:g.335488C>T, NT_187693.1:g.336806C>G, NT_187693.1:g.336806C>T, NC_000019.9:g.54865692C>G, NC_000019.9:g.54865692C>T, NW_003571060.1:g.258733C>G, NW_003571060.1:g.258733C>T, NM_002287.6:c.*1185G>C, NM_002287.6:c.*1185G>A, NM_002287.5:c.*1185G>C, NM_002287.5:c.*1185G>A, NM_002287.4:c.*1185G>C, NM_002287.4:c.*1185G>A, NM_002287.3:c.*1185G>C, NM_002287.3:c.*1185G>A, NM_021706.5:c.*1185G>C, NM_021706.5:c.*1185G>A, NM_021706.4:c.*1185G>C, NM_021706.4:c.*1185G>A, NM_021706.3:c.*1185G>C, NM_021706.3:c.*1185G>A, NM_021706.2:c.*1185G>C, NM_021706.2:c.*1185G>A, NM_001289025.2:c.*1185G>C, NM_001289025.2:c.*1185G>A, NM_001289025.3:c.*1185G>C, NM_001289025.3:c.*1185G>A, NM_001289025.1:c.*1185G>C, NM_001289025.1:c.*1185G>A, NM_001289027.3:c.*1185G>C, NM_001289027.3:c.*1185G>A, NM_001289027.2:c.*1185G>C, NM_001289027.2:c.*1185G>A, NM_001289027.1:c.*1185G>C, NM_001289027.1:c.*1185G>A, NM_001289023.3:c.*1185G>C, NM_001289023.3:c.*1185G>A, NM_001289023.2:c.*1185G>C, NM_001289023.2:c.*1185G>A, NM_001289023.1:c.*1185G>C, NM_001289023.1:c.*1185G>A, NR_110279.3:n.2082G>C, NR_110279.3:n.2082G>A, NR_110279.2:n.2265G>C, NR_110279.2:n.2265G>A, NR_110279.1:n.2265G>C, NR_110279.1:n.2265G>A, XM_047438811.1:c.*1185G>C, XM_047438811.1:c.*1185G>A, XM_047438810.1:c.*1185G>C, XM_047438810.1:c.*1185G>A, NR_110280.3:n.2417G>C, NR_110280.3:n.2417G>A, NR_110280.2:n.2600G>C, NR_110280.2:n.2600G>A, NR_110280.1:n.2600G>C, NR_110280.1:n.2600G>A, NM_001289026.3:c.*1185G>C, NM_001289026.3:c.*1185G>A, NM_001289026.2:c.*1185G>C, NM_001289026.2:c.*1185G>A, NM_001289026.1:c.*1185G>C, NM_001289026.1:c.*1185G>A, XM_047438812.1:c.*1185G>C, XM_047438812.1:c.*1185G>A

Select item 148903757919.

rs1489037579 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 19:54365414 (GRCh38)
19:54877021 (GRCh37)
Canonical SPDI:: NC_000019.10:54365413:T:C,NC_000019.10:54365413:T:G
Gene:: LAIR1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.54365414T>C, NC_000019.10:g.54365414T>G, NW_004166865.1:g.339781T>C, NW_004166865.1:g.339781T>G, NW_003571061.2:g.347375T>C, NW_003571061.2:g.347375T>G, NW_003571061.1:g.347374T>C, NW_003571061.1:g.347374T>G, NW_003571055.2:g.346820T>C, NW_003571055.2:g.346820T>G, NW_003571055.1:g.346819T>C, NW_003571055.1:g.346819T>G, NT_187693.1:g.348135T>C, NT_187693.1:g.348135T>G, NC_000019.9:g.54877021T>C, NC_000019.9:g.54877021T>G, NW_003571060.1:g.270065T>C, NW_003571060.1:g.270065T>G

Select item 148900643320.

rs1489006433 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:54363717 (GRCh38)
19:54875324 (GRCh37)
Canonical SPDI:: NC_000019.10:54363716:G:A,NC_000019.10:54363716:G:C
Gene:: LAIR1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.54363717G>A, NC_000019.10:g.54363717G>C, NW_004166865.1:g.338084G>A, NW_004166865.1:g.338084G>C, NW_003571061.2:g.345678G>A, NW_003571061.2:g.345678G>C, NW_003571061.1:g.345677G>A, NW_003571061.1:g.345677G>C, NW_003571055.2:g.345121G>A, NW_003571055.2:g.345121G>C, NW_003571055.1:g.345120G>A, NW_003571055.1:g.345120G>C, NT_187693.1:g.346438G>A, NT_187693.1:g.346438G>C, NC_000019.9:g.54875324G>A, NC_000019.9:g.54875324G>C, NW_003571060.1:g.268366G>A, NW_003571060.1:g.268366G>C

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