SNP Links for Gene (Select 101929407) - SNP

Links from Gene

Items: 1 to 20 of 2018

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Select item 14914904301.

rs1491490430 has merged into rs143084012 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA,TATATA [Show Flanks]
Chromosome:: 9:8856552 (GRCh38)
9:8856552 (GRCh37)
Canonical SPDI:: NC_000009.12:8856540:ATATATATATATA:ATATATATATA,NC_000009.12:8856540:ATATATATATATA:ATATATATATATATA,NC_000009.12:8856540:ATATATATATATA:ATATATATATATATATA
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATATATATA=0.03003/513 (ALFA)
AT=0.025/1 (GENOME_DK)
AT=0.04206/9 (Vietnamese)
AT=0.05981/300 (1000Genomes)
AT=0.07924/355 (Estonian)
AT=0.08447/1416 (TOMMO)
AT=0.09018/90 (GoNL)
AT=0.10167/61 (NorthernSweden)
HGVS:: NC_000009.12:g.8856542TA[5], NC_000009.12:g.8856542TA[7], NC_000009.12:g.8856542TA[8], NC_000009.11:g.8856542TA[5], NC_000009.11:g.8856542TA[7], NC_000009.11:g.8856542TA[8], NG_033963.1:g.1761172AT[5], NG_033963.1:g.1761172AT[7], NG_033963.1:g.1761172AT[8]

Select item 14913617822.

rs1491361782 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 9:8858830 (GRCh38)
9:8858830 (GRCh37)
Canonical SPDI:: NC_000009.12:8858828:ATA:A
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.005564/66 (ALFA)
-=0.000035/1 (TOMMO)
-=0.034125/4284 (GnomAD)
-=0.046667/28 (NorthernSweden)
-=0.06041/224 (TWINSUK)
-=0.077582/299 (ALSPAC)
HGVS:: NC_000009.12:g.8858830_8858831del, NC_000009.11:g.8858830_8858831del, NG_033963.1:g.1758894_1758895del

Select item 14910185133.

rs1491018513 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 9:8858695 (GRCh38)
9:8858695 (GRCh37)
Canonical SPDI:: NC_000009.12:8858694:TG:
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.00023/6 (GnomAD)
HGVS:: NC_000009.12:g.8858695_8858696del, NC_000009.11:g.8858695_8858696del, NG_033963.1:g.1759028_1759029del

Select item 14900988364.

rs1490098836 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTT>- [Show Flanks]
Chromosome:: 9:8858539 (GRCh38)
9:8858539 (GRCh37)
Canonical SPDI:: NC_000009.12:8858537:TCTTT:T
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000023/6 (TOPMED)
-=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.8858539_8858542del, NC_000009.11:g.8858539_8858542del, NG_033963.1:g.1759183_1759186del

Select item 14894784795.

rs1489478479 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 14893834166.

rs1489383416 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:8857931 (GRCh38)
9:8857931 (GRCh37)
Canonical SPDI:: NC_000009.12:8857930:A:C
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00059/7 (ALFA)
C=0.00359/59 (TOMMO)
C=0.01482/26 (Korea1K)
C=0.04413/124 (KOREAN)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000009.12:g.8857931A>C, NC_000009.11:g.8857931A>C, NG_033963.1:g.1759793T>G

Select item 14885387607.

rs1488538760 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:8857532 (GRCh38)
9:8857532 (GRCh37)
Canonical SPDI:: NC_000009.12:8857531:C:G,NC_000009.12:8857531:C:T
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000009.12:g.8857532C>G, NC_000009.12:g.8857532C>T, NC_000009.11:g.8857532C>G, NC_000009.11:g.8857532C>T, NG_033963.1:g.1760192G>C, NG_033963.1:g.1760192G>A, NM_001377947.1:c.-264G>C, NM_001377947.1:c.-264G>A

Select item 14881026988.

rs1488102698 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:8860326 (GRCh38)
9:8860326 (GRCh37)
Canonical SPDI:: NC_000009.12:8860325:A:C
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.8860326A>C, NC_000009.11:g.8860326A>C, NG_033963.1:g.1757398T>G

Select item 14881021999.

rs1488102199 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:8857665 (GRCh38)
9:8857665 (GRCh37)
Canonical SPDI:: NC_000009.12:8857664:C:T
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.8857665C>T, NC_000009.11:g.8857665C>T, NG_033963.1:g.1760059G>A, NM_001171025.2:c.-131G>A, NM_001377958.1:c.-131G>A, NM_001378058.1:c.-131G>A, NM_001377947.1:c.-397G>A, NM_001377946.1:c.-131G>A, XM_047423643.1:c.-131G>A, XM_047423646.1:c.-131G>A, XM_047423648.1:c.-131G>A, XM_047423655.1:c.-131G>A, XM_047423656.1:c.-131G>A, XM_047423658.1:c.-131G>A, XM_047423659.1:c.-131G>A, XM_047423660.1:c.-131G>A

Select item 148755545310.

rs1487555453 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:8857741 (GRCh38)
9:8857741 (GRCh37)
Canonical SPDI:: NC_000009.12:8857740:C:A
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000042/11 (TOPMED)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000009.12:g.8857741C>A, NC_000009.11:g.8857741C>A, NG_033963.1:g.1759983G>T, NM_001171025.2:c.-207G>T, NM_001377958.1:c.-207G>T, NM_001378058.1:c.-207G>T, NM_001377947.1:c.-473G>T, NM_001377946.1:c.-207G>T, XM_047423643.1:c.-207G>T, XM_047423646.1:c.-207G>T, XM_047423648.1:c.-207G>T, XM_047423655.1:c.-207G>T, XM_047423656.1:c.-207G>T, XM_047423658.1:c.-207G>T, XM_047423659.1:c.-207G>T, XM_047423660.1:c.-207G>T

Select item 148750341611.

rs1487503416 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 9:8858117 (GRCh38)
9:8858117 (GRCh37)
Canonical SPDI:: NC_000009.12:8858116:T:A,NC_000009.12:8858116:T:G
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.8858117T>A, NC_000009.12:g.8858117T>G, NC_000009.11:g.8858117T>A, NC_000009.11:g.8858117T>G, NG_033963.1:g.1759607A>T, NG_033963.1:g.1759607A>C, NR_121599.1:n.100T>A, NR_121599.1:n.100T>G, NR_121600.1:n.100T>A, NR_121600.1:n.100T>G

Select item 148748229412.

rs1487482294 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:8857882 (GRCh38)
9:8857882 (GRCh37)
Canonical SPDI:: NC_000009.12:8857881:G:A
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.8857882G>A, NC_000009.11:g.8857882G>A, NG_033963.1:g.1759842C>T

Select item 148698544513.

rs1486985445 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:8857626 (GRCh38)
9:8857626 (GRCh37)
Canonical SPDI:: NC_000009.12:8857625:C:A,NC_000009.12:8857625:C:T
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.8857626C>A, NC_000009.12:g.8857626C>T, NC_000009.11:g.8857626C>A, NC_000009.11:g.8857626C>T, NG_033963.1:g.1760098G>T, NG_033963.1:g.1760098G>A, NM_001377947.1:c.-358G>T, NM_001377947.1:c.-358G>A

Select item 148661934514.

rs1486619345 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:8858613 (GRCh38)
9:8858613 (GRCh37)
Canonical SPDI:: NC_000009.12:8858612:G:A,NC_000009.12:8858612:G:C
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.8858613G>A, NC_000009.12:g.8858613G>C, NC_000009.11:g.8858613G>A, NC_000009.11:g.8858613G>C, NG_033963.1:g.1759111C>T, NG_033963.1:g.1759111C>G

Select item 148660870715.

rs1486608707 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:8860317 (GRCh38)
9:8860317 (GRCh37)
Canonical SPDI:: NC_000009.12:8860316:G:C
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.8860317G>C, NC_000009.11:g.8860317G>C, NG_033963.1:g.1757407C>G

Select item 148643136116.

rs1486431361 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:8860203 (GRCh38)
9:8860203 (GRCh37)
Canonical SPDI:: NC_000009.12:8860202:C:T
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000009.12:g.8860203C>T, NC_000009.11:g.8860203C>T, NG_033963.1:g.1757521G>A

Select item 148563864217.

rs1485638642 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:8858348 (GRCh38)
9:8858348 (GRCh37)
Canonical SPDI:: NC_000009.12:8858347:G:C
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.8858348G>C, NC_000009.11:g.8858348G>C, NG_033963.1:g.1759376C>G

Select item 148562662018.

rs1485626620 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:8861274 (GRCh38)
9:8861274 (GRCh37)
Canonical SPDI:: NC_000009.12:8861273:G:C
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.8861274G>C, NC_000009.11:g.8861274G>C, NG_033963.1:g.1756450C>G, NR_121599.1:n.881G>C, NR_121600.1:n.799G>C

Select item 148545099119.

rs1485450991 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:8860555 (GRCh38)
9:8860555 (GRCh37)
Canonical SPDI:: NC_000009.12:8860554:C:G,NC_000009.12:8860554:C:T
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000009.12:g.8860555C>G, NC_000009.12:g.8860555C>T, NC_000009.11:g.8860555C>G, NC_000009.11:g.8860555C>T, NG_033963.1:g.1757169G>C, NG_033963.1:g.1757169G>A

Select item 148543231920.

rs1485432319 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:8861630 (GRCh38)
9:8861630 (GRCh37)
Canonical SPDI:: NC_000009.12:8861629:T:C
Gene:: PTPRD (Varview), PTPRD-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000036/5 (GnomAD)
HGVS:: NC_000009.12:g.8861630T>C, NC_000009.11:g.8861630T>C, NG_033963.1:g.1756094A>G, NR_121599.1:n.1237T>C, NR_121600.1:n.1155T>C

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Items: 1 to 20 of 2018

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