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    ribosomal RNA-processing 7 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833863, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ribosomal RNA-processing 7 protein
    Primary source
    TAIR:AT5G38720
    Locus tag
    AT5G38720
    See related
    Araport:AT5G38720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MKD10.4; MKD10_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (15508196..15510713, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Methylenetetrahydrofolate reductase family protein Neighboring gene miscRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene AGAMOUS-like 77

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RIBOSOMAL RNA PROCESSING7 Is Required for 18S rRNA Maturation. Micol-Ponce R, et al. Plant Cell, 2018 Nov. PMID 30361235, Free PMC Article
    2. Arabidopsis MAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing. Sánchez-García AB, et al. Plant Cell, 2015 Jul. PMID 26139346, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344264.1
    NM_123233.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ribosomal small subunit assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA-processing 7 protein
    NP_198688.2
    • unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15508196..15510713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344263.1 → NP_001332268.1  ribosomal RNA-processing 7 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDU5, A0A1P8BGF0

    2. NM_123233.4 → NP_198688.2  ribosomal RNA-processing 7 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198688.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDU5, Q8GYF9
      Conserved Domains (1) summary
      cd12951
      Location:172 → 306
      RRP7_Rrp7A; RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins

    3. NM_001344264.1 → NP_001332269.1  ribosomal RNA-processing 7 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGG1, A0A5S9Y936, A0A654G670
      Conserved Domains (1) summary
      cd12951
      Location:179 → 313
      RRP7_Rrp7A; RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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