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Conserved domains on  [gi|1063735009|ref|NP_001332269|]
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ribosomal RNA-processing 7 protein [Arabidopsis thaliana]

Protein Classification

RRP7_Rrp7A domain-containing protein( domain architecture ID 10191729)

RRP7_Rrp7A domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RRP7_Rrp7A cd12951
RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins; The ...
 179-313 3.21e-36

RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins; The family corresponds to the RRP7 domain of Rrp7A, also termed gastric cancer antigen Zg14, and similar proteins which are yeast ribosomal RNA-processing protein 7 (Rrp7p) homologs mainly found in Metazoans. The cellular function of Rrp7A remains unclear currently. Rrp7A harbors an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RRP7 domain.


:

Pssm-ID: 240578 [Multi-domain]  Cd Length: 129  Bit Score: 126.62  E-value: 3.21e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063735009 179 GMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQ--DKEAKAAEGGWTVVVHHKGRKKTTESEtgtavgsfSQAA 256
Cdd:cd12951     1 GLKKWVEEYNASIPDPAELQSEIDEYMEEYDKEEEEEKEekEKEAEPDEDGWVTVTKKGRRPKTARKE--------SVAA 72

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063735009 257 LEDKIAKKKQSEPVAHGFYRFQRRDAQRNELLALQSKFEEDKKRIQQLRAARRFKPF 313
Cdd:cd12951    73 KAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRIALLKAARKFKPY 129
 
Name Accession Description Interval E-value
RRP7_Rrp7A cd12951
RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins; The ...
 179-313 3.21e-36

RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins; The family corresponds to the RRP7 domain of Rrp7A, also termed gastric cancer antigen Zg14, and similar proteins which are yeast ribosomal RNA-processing protein 7 (Rrp7p) homologs mainly found in Metazoans. The cellular function of Rrp7A remains unclear currently. Rrp7A harbors an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RRP7 domain.


Pssm-ID: 240578 [Multi-domain]  Cd Length: 129  Bit Score: 126.62  E-value: 3.21e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063735009 179 GMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQ--DKEAKAAEGGWTVVVHHKGRKKTTESEtgtavgsfSQAA 256
Cdd:cd12951     1 GLKKWVEEYNASIPDPAELQSEIDEYMEEYDKEEEEEKEekEKEAEPDEDGWVTVTKKGRRPKTARKE--------SVAA 72

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063735009 257 LEDKIAKKKQSEPVAHGFYRFQRRDAQRNELLALQSKFEEDKKRIQQLRAARRFKPF 313
Cdd:cd12951    73 KAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRIALLKAARKFKPY 129
RRP7 pfam12923
Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain; RRP7 is an essential protein in ...
 191-313 6.74e-21

Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain; RRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle.


Pssm-ID: 432877  Cd Length: 119  Bit Score: 86.21  E-value: 6.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063735009 191 RPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA---EGGWTVVVHHKGRKKTTESetgtavgsfsQAALEDKIAKKKQS 267
Cdd:pfam12923   4 RPDPEALQQEVDEYMEEFDAEEEEEKRERKKARNepdEDGFVTVTRGGPGGARKEA----------AEEKIAKKEKKKKK 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1063735009 268 EPVAHGFYRFQRRDAQRNELLALQSKFEEDKKRIQQLRAARRFKPF 313
Cdd:pfam12923  74 KKELLDFYRFQIREKKKNELAELRKKFEEDKEKIEKLKESRKFKPY 119
 
Name Accession Description Interval E-value
RRP7_Rrp7A cd12951
RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins; The ...
 179-313 3.21e-36

RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins; The family corresponds to the RRP7 domain of Rrp7A, also termed gastric cancer antigen Zg14, and similar proteins which are yeast ribosomal RNA-processing protein 7 (Rrp7p) homologs mainly found in Metazoans. The cellular function of Rrp7A remains unclear currently. Rrp7A harbors an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RRP7 domain.


Pssm-ID: 240578 [Multi-domain]  Cd Length: 129  Bit Score: 126.62  E-value: 3.21e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063735009 179 GMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQ--DKEAKAAEGGWTVVVHHKGRKKTTESEtgtavgsfSQAA 256
Cdd:cd12951     1 GLKKWVEEYNASIPDPAELQSEIDEYMEEYDKEEEEEKEekEKEAEPDEDGWVTVTKKGRRPKTARKE--------SVAA 72

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063735009 257 LEDKIAKKKQSEPVAHGFYRFQRRDAQRNELLALQSKFEEDKKRIQQLRAARRFKPF 313
Cdd:cd12951    73 KAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRIALLKAARKFKPY 129
RRP7_like cd12932
RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p), ribosomal RNA-processing protein 7 ...
 179-301 1.38e-25

RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A (Rrp7A), and similar proteins; This CD corresponds to the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by YCL031C gene from Saccharomyces cerevisiae. It is an essential yeast protein involved in pre-rRNA processing and ribosome assembly, and is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle. Rrp7A, also termed gastric cancer antigen Zg14, is the Rrp7p homolog mainly found in Metazoans. The cellular function of Rrp7A remains unclear currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RRP7 domain.


Pssm-ID: 240576 [Multi-domain]  Cd Length: 118  Bit Score: 98.48  E-value: 1.38e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063735009 179 GMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA---EGGWTVVVHHKGRKKTTESEtgtavgsfSQA 255
Cdd:cd12932     1 GLKKWVAEYKRSRPDPAELQSEVDEYMEEFDKREEEEKEEAKEARNepdEDGFVTVTRGGRKGKTAREE--------AVE 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1063735009 256 ALEDKIAKKKQSEPVAHGFYRFQRRDAQRNELLALQSKFEEDKKRI 301
Cdd:cd12932    73 AKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKRI 118
RRP7 pfam12923
Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain; RRP7 is an essential protein in ...
 191-313 6.74e-21

Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain; RRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle.


Pssm-ID: 432877  Cd Length: 119  Bit Score: 86.21  E-value: 6.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063735009 191 RPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA---EGGWTVVVHHKGRKKTTESetgtavgsfsQAALEDKIAKKKQS 267
Cdd:pfam12923   4 RPDPEALQQEVDEYMEEFDAEEEEEKRERKKARNepdEDGFVTVTRGGPGGARKEA----------AEEKIAKKEKKKKK 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1063735009 268 EPVAHGFYRFQRRDAQRNELLALQSKFEEDKKRIQQLRAARRFKPF 313
Cdd:pfam12923  74 KKELLDFYRFQIREKKKNELAELRKKFEEDKEKIEKLKESRKFKPY 119
RRP7_Rrp7p cd12950
RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p) and similar proteins; This CD ...
 191-308 7.33e-14

RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p) and similar proteins; This CD corresponds to the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C gene from Saccharomyces cerevisiae. It is an essential yeast protein involved in pre-rRNA processing and ribosome assembly. Rrp7p contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RRP7 domain.


Pssm-ID: 240577  Cd Length: 128  Bit Score: 67.30  E-value: 7.33e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063735009 191 RPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA---EGGWTVVVHHKGRKKTTESETGtavgsFSQAALEDKIAKKKQS 267
Cdd:cd12950    13 RPPLEALQESVDSFMALFEAREEERKRERKRLRNepdEDGFVTVVRGGRKGPAAGEEAG-----KAAEEEKKEKEKKKKK 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1063735009 268 EPVAHGFYRFQRRDAQRNELLALQSKFEEDKKRIQQLRAAR 308
Cdd:cd12950    88 KKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMKEKR 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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