JAZ10 jasmonate-zim-domain protein 10 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: JAZ10
Official Full Name: jasmonate-zim-domain protein 10
Primary source: TAIR:AT5G13220
Locus tag: AT5G13220
See related: Araport:AT5G13220
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; jasmonate-zim-domain protein 10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9
Summary: Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.
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Genomic context

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See JAZ10 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 5

Sequence:: Chromosome: 5; NC_003076.8 (4218786..4221077)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

a null mutation of the JAZ10 gene in Arabidopsis did not affect plant growth nor did it suppress the shade-avoidance responses elicited by phyB inactivation.
Title: Exploring growth-defence trade-offs in Arabidopsis: phytochrome B inactivation requires JAZ10 to suppress plant immunity but not to trigger shade-avoidance responses.
JAZ1 and JAZ10 were the only JAZ proteins still showing interaction with the mutant MYC proteins, due to a second MYC interaction domain, besides the classical Jas domain.
Title: Change of a conserved amino acid in the MYC2 and MYC3 transcription factors leads to release of JAZ repression and increased activity.
JAZ10 plays a functional role in the link between phytochrome and jasmonate signaling.
Title: Linking phytochrome to plant immunity: low red : far-red ratios increase Arabidopsis susceptibility to Botrytis cinerea by reducing the biosynthesis of indolic glucosinolates and camalexin.
Under conditions of competition for light, plants redirect resource allocation from defense to rapid elongation by promoting DELLA degradation and enhancing JAZ10 stability.
Title: To grow or defend? Low red : far-red ratios reduce jasmonate sensitivity in Arabidopsis seedlings by promoting DELLA degradation and increasing JAZ10 stability.
Jasmonic acid-induced transcription and alternative splicing of JAZ10 premessenger RNA creates a regulatory circuit to attenuate jasmonic acid responses.
Title: Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.
These results suggest that the Low red/far-red effect, in contrast to the salicylic acid effect, requires a functional SCFCOI1-JASMONATE ZIM-DOMAIN (JAZ) JA receptor module.
Title: Low red/far-red ratios reduce Arabidopsis resistance to Botrytis cinerea and jasmonate responses via a COI1-JAZ10-dependent, salicylic acid-independent mechanism.
Findings indicate that JAZ splice variants have reduced capacity to form stable complexes with COI1 in the presence of the bioactive stereoisomer of the hormone (3R,7S)-JA-Ile.
Title: Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling.
JAZ10.4 functions to dampen signal output in the presence of jasmonate and that the repressive activity of this splice variant depends on the ZIM/TIFY domain.
Title: A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001161241.2

Supported by ESTs:

NM_001343260.1

Supported by ESTs:

NM_001343261.1

Supported by ESTs:

NM_001343262.1

Supported by ESTs:

NM_121325.3

Supported by ESTs:

NM_203046.3

Supported by ESTs:

NM_203047.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein homodimerization activity	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of jasmonic acid mediated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of systemic acquired resistance	IEP Inferred from Expression Pattern more info	PubMed
NOT involved_in response to auxin	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to jasmonic acid	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to jasmonic acid	IMP Inferred from Mutant Phenotype more info	PubMed
NOT involved_in response to salicylic acid	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to wounding	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to wounding	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to wounding	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: jasmonate-zim-domain protein 10

NP_001154713.1

jasmonate-zim-domain protein 10; FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399); Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NP_568287.1

jasmonate-zim-domain protein 10 (JAZ10); FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 12 (TAIR:AT5G20900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_974775.1

jasmonate-zim-domain protein 10 (JAZ10); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 1 (TAIR:AT1G19180.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_974776.1

jasmonate-zim-domain protein 10 (JAZ10); FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 1 (TAIR:AT1G19180.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

4218786..4221077

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_203046.3 → NP_974775.1 jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974775.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UCP4, A0A7G2FC88

Conserved Domains (2) summary

smart00979
Location:98 → 132

TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

pfam09425
Location:168 → 185

CCT_2; Divergent CCT motif
NM_203047.3 → NP_974776.1 jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974776.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UCP4, A0A7G2FC88

Conserved Domains (2) summary

smart00979
Location:98 → 132

TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

pfam09425
Location:168 → 185

CCT_2; Divergent CCT motif
NM_121325.3 → NP_568287.1 jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568287.1

Status: REVIEWED

UniProtKB/Swiss-Prot

C0JPT8, Q3E9I1, Q3E9I2, Q93ZM9, Q9LYV4

UniProtKB/TrEMBL

A0A178UCD2, A0A5S9Y3Q0, A0A7G2FC88

Conserved Domains (2) summary

smart00979
Location:98 → 132

TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

pfam09425
Location:168 → 192

CCT_2; Divergent CCT motif
NM_001343260.1 → NP_001330992.1 jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UE80, A0A1P8BCK0, A0A384LPD1

Conserved Domains (1) summary

cl05618
Location:98 → 132

tify; tify domain
NM_001161241.2 → NP_001154713.1 jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001154713.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q93ZM9

Conserved Domains (1) summary

smart00979
Location:98 → 132

TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
NM_001343262.1 → NP_001330994.1 jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BCH9, A0A7G2FC88
NM_001343261.1 → NP_001330993.1 jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UFM1, A0A1P8BCI4, A0A384L6J5, A0A7G2FC88