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Conserved domains on  [gi|18416997|ref|NP_568287|]
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jasmonate-zim-domain protein 10 [Arabidopsis thaliana]

Protein Classification

TIFY and CCT_2 domain-containing protein( domain architecture ID 10659519)

TIFY and CCT_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Jas_motif pfam09425
Jas motif; This entry represents the Jas motif. The Jas motif can bind to jasmonate as a ...
 168-192 1.16e-10

Jas motif; This entry represents the Jas motif. The Jas motif can bind to jasmonate as a partially unwound helix. It can also bind to Myc proteins which are key mediators of josmonate signalling in plants.


:

Pssm-ID: 430603  Cd Length: 25  Bit Score: 54.00  E-value: 1.16e-10
                          10        20
                  ....*....|....*....|....*
gi 18416997   168 PIARRKSLQRFLEKRKERLVSTSPY 192
Cdd:pfam09425   1 PIARKASLQRFLEKRKDRLAAKAPY 25
TIFY smart00979
This short possible domain is found in a variety of plant transcription factors that contain ...
 98-132 1.43e-09

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


:

Pssm-ID: 198047  Cd Length: 36  Bit Score: 51.49  E-value: 1.43e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 18416997     98 LVSGTVPMTIFYNGSVSVFQ-VSRNKAGEIMKVANE 132
Cdd:smart00979   1 PPEGSQQLTIFYGGSVCVFDdVPPEKAQEIMSLAGN 36
 
Name Accession Description Interval E-value
Jas_motif pfam09425
Jas motif; This entry represents the Jas motif. The Jas motif can bind to jasmonate as a ...
 168-192 1.16e-10

Jas motif; This entry represents the Jas motif. The Jas motif can bind to jasmonate as a partially unwound helix. It can also bind to Myc proteins which are key mediators of josmonate signalling in plants.


Pssm-ID: 430603  Cd Length: 25  Bit Score: 54.00  E-value: 1.16e-10
                          10        20
                  ....*....|....*....|....*
gi 18416997   168 PIARRKSLQRFLEKRKERLVSTSPY 192
Cdd:pfam09425   1 PIARKASLQRFLEKRKDRLAAKAPY 25
TIFY smart00979
This short possible domain is found in a variety of plant transcription factors that contain ...
 98-132 1.43e-09

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 198047  Cd Length: 36  Bit Score: 51.49  E-value: 1.43e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 18416997     98 LVSGTVPMTIFYNGSVSVFQ-VSRNKAGEIMKVANE 132
Cdd:smart00979   1 PPEGSQQLTIFYGGSVCVFDdVPPEKAQEIMSLAGN 36
tify pfam06200
tify domain; This short possible domain is found in a variety of plant transcription factors ...
 100-131 6.17e-07

tify domain; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 461847  Cd Length: 33  Bit Score: 44.29  E-value: 6.17e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 18416997   100 SGTVPMTIFYNGSVSVFQ-VSRNKAGEIMKVAN 131
Cdd:pfam06200   1 PASAQLTIFYGGKVCVFDdVPAEKAQAIMLLAG 33
 
Name Accession Description Interval E-value
Jas_motif pfam09425
Jas motif; This entry represents the Jas motif. The Jas motif can bind to jasmonate as a ...
 168-192 1.16e-10

Jas motif; This entry represents the Jas motif. The Jas motif can bind to jasmonate as a partially unwound helix. It can also bind to Myc proteins which are key mediators of josmonate signalling in plants.


Pssm-ID: 430603  Cd Length: 25  Bit Score: 54.00  E-value: 1.16e-10
                          10        20
                  ....*....|....*....|....*
gi 18416997   168 PIARRKSLQRFLEKRKERLVSTSPY 192
Cdd:pfam09425   1 PIARKASLQRFLEKRKDRLAAKAPY 25
TIFY smart00979
This short possible domain is found in a variety of plant transcription factors that contain ...
 98-132 1.43e-09

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 198047  Cd Length: 36  Bit Score: 51.49  E-value: 1.43e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 18416997     98 LVSGTVPMTIFYNGSVSVFQ-VSRNKAGEIMKVANE 132
Cdd:smart00979   1 PPEGSQQLTIFYGGSVCVFDdVPPEKAQEIMSLAGN 36
tify pfam06200
tify domain; This short possible domain is found in a variety of plant transcription factors ...
 100-131 6.17e-07

tify domain; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 461847  Cd Length: 33  Bit Score: 44.29  E-value: 6.17e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 18416997   100 SGTVPMTIFYNGSVSVFQ-VSRNKAGEIMKVAN 131
Cdd:pfam06200   1 PASAQLTIFYGGKVCVFDdVPAEKAQAIMLLAG 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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