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    transcriptional regulator of RNA polII, SAGA, subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829532, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcriptional regulator of RNA polII, SAGA, subunit
    Primary source
    TAIR:AT4G33890
    Locus tag
    AT4G33890
    See related
    Araport:AT4G33890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17I5.80; F17I5_80
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (16249614..16251383)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis. Wu CJ, et al. Mol Plant, 2021 Jul 5. PMID 33737195
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_119547.5
    NM_202948.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA-type complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcriptional regulator of RNA polII, SAGA, subunit
    NP_195115.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 133 Blast hits to 131 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 129; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_974677.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16249614..16251383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119547.5 → NP_195115.1  transcriptional regulator of RNA polII, SAGA, subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195115.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FV90, A0A7G2F7U8, O81757
      Conserved Domains (1) summary
      pfam12767
      Location:9 → 282
      SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit

    2. NM_202948.1 → NP_974677.1  transcriptional regulator of RNA polII, SAGA, subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974677.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FV90, A0A7G2F7U8, O81757
      Conserved Domains (1) summary
      pfam12767
      Location:9 → 282
      SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit
    Nucleotide Protein
    Heading Accession and Version

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