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    ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824165, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
    Primary source
    TAIR:AT3G50030
    Locus tag
    AT3G50030
    See related
    Araport:AT3G50030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18546444..18548240, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene casein kinase II, alpha chain 2 Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Serine protease inhibitor, potato inhibitor I-type family protein Neighboring gene uncharacterized protein Neighboring gene Eukaryotic aspartyl protease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114863.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
    NP_190572.1
    • ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (TAIR:AT5G43120.1); Has 1091 Blast hits to 1050 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 172; Plants - 154; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18546444..18548240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114863.2 → NP_190572.1  ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190572.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FEG6, Q9SN15
      Conserved Domains (3) summary
      sd00006
      Location:398 → 428
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:377 → 429
      TPR_11; TPR repeat
      cl22454
      Location:87 → 184
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    Nucleotide Protein
    Heading Accession and Version

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