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    UBX domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821720, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UBX domain-containing protein
    Primary source
    TAIR:AT3G21660
    Locus tag
    AT3G21660
    See related
    Araport:AT3G21660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (7624406..7626654, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FKBP-type peptidyl-prolyl cis-trans isomerase family protein Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene Major facilitator superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UBX domain-containing protein
    NP_188803.1
    • UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP domain (InterPro:IPR012989); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (TAIR:AT4G15410.1); Has 1125 Blast hits to 712 proteins in 211 species: Archae - 0; Bacteria - 35; Metazoa - 526; Fungi - 227; Plants - 187; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7624406..7626654 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113061.2 → NP_188803.1  UBX domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188803.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IXN6, Q9LVE1
      UniProtKB/TrEMBL
      A0A654F9G8
      Conserved Domains (2) summary
      cl00155
      Location:358 → 434
      UBQ; Ubiquitin-like proteins
      cl02662
      Location:148 → 222
      SEP; SEP domain

    2. NM_001338547.1 → NP_001327364.1  UBX domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LS32, A0A5S9XEJ0, A0A654F9G8
      Conserved Domains (3) summary
      cd01770
      Location:366 → 437
      UBX_UBXN2; Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, NSFL1C/UBXN2C, and similar proteins
      pfam08059
      Location:273 → 327
      SEP; SEP domain
      cl02662
      Location:148 → 222
      SEP; SEP domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IXN6.1

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