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Conserved domains on  [gi|15233121|ref|NP_188803|]
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UBX domain-containing protein [Arabidopsis thaliana]

Protein Classification

UBX domain-containing protein( domain architecture ID 10250309)

UBX domain-containing protein with SEP domain; similar to Arabidopsis thaliana plant UBX domain-containing protein 6

PubMed:  11243799

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UBX_UBXN2 cd01770
Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, ...
 363-434 2.23e-30

Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, NSFL1C/UBXN2C, and similar proteins; This family includes UBX domain-containing proteins UBXN2A, UBXN2B, and NSFL1C/UBXN2C, which contain a SEP (Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47) domain, and a ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold at the C-terminus. UBX domain participates broadly in the regulation of protein degradation. UBXN2A, UBXN2B, and UBXN2C function as the adaptor proteins of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation.


:

Pssm-ID: 340468  Cd Length: 71  Bit Score: 111.89  E-value: 2.23e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233121 363 SIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMgSPPTPLSDFDQTIEKAGIANSVLVQK 434
Cdd:cd01770   1 SIQIRLADGSRLVARFNLTHTVGDIRQFIDSARPGYSRPFVLMTG-FPPKELTDESQTLEEAGLLNAVVVQK 71
SEP super family cl02662
SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila ...
 148-222 7.46e-25

SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L. Most SEP domains are succeeded closely by a UBX domain.


The actual alignment was detected with superfamily member smart00553:

Pssm-ID: 470648  Cd Length: 93  Bit Score: 97.48  E-value: 7.46e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121    148 QKVFtHTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPRELGQV----RVQVKIISREEENYTE----------- 212
Cdd:smart00553   1 QKVI-HTLTFWSNGFSVDDGPLRTYDDPENAEFLESIRRGEAPLELLRVakgqPVNVDVEDHRDEDYVAppgafkpfsgs 79

                           90
                   ....*....|....
gi 15233121    213 ----SQAGSDSAST 222
Cdd:smart00553  80 gqklGSPGPQSLST 93
SEP super family cl02662
SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila ...
 273-300 1.61e-11

SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L. Most SEP domains are succeeded closely by a UBX domain.


The actual alignment was detected with superfamily member pfam08059:

Pssm-ID: 470648  Cd Length: 75  Bit Score: 59.79  E-value: 1.61e-11
                          10        20
                  ....*....|....*....|....*...
gi 15233121   273 VTIWRNGFTVDDDPFKSLDDPENAAFLE 300
Cdd:pfam08059   1 LTFWRNGFSVDDGPLRRYDDPANAEFLE 28
 
Name Accession Description Interval E-value
UBX_UBXN2 cd01770
Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, ...
 363-434 2.23e-30

Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, NSFL1C/UBXN2C, and similar proteins; This family includes UBX domain-containing proteins UBXN2A, UBXN2B, and NSFL1C/UBXN2C, which contain a SEP (Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47) domain, and a ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold at the C-terminus. UBX domain participates broadly in the regulation of protein degradation. UBXN2A, UBXN2B, and UBXN2C function as the adaptor proteins of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation.


Pssm-ID: 340468  Cd Length: 71  Bit Score: 111.89  E-value: 2.23e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233121 363 SIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMgSPPTPLSDFDQTIEKAGIANSVLVQK 434
Cdd:cd01770   1 SIQIRLADGSRLVARFNLTHTVGDIRQFIDSARPGYSRPFVLMTG-FPPKELTDESQTLEEAGLLNAVVVQK 71
SEP smart00553
Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc) ...
 148-222 7.46e-25

Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47;


Pssm-ID: 197786  Cd Length: 93  Bit Score: 97.48  E-value: 7.46e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121    148 QKVFtHTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPRELGQV----RVQVKIISREEENYTE----------- 212
Cdd:smart00553   1 QKVI-HTLTFWSNGFSVDDGPLRTYDDPENAEFLESIRRGEAPLELLRVakgqPVNVDVEDHRDEDYVAppgafkpfsgs 79

                           90
                   ....*....|....
gi 15233121    213 ----SQAGSDSAST 222
Cdd:smart00553  80 gqklGSPGPQSLST 93
SEP pfam08059
SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila ...
 155-212 1.63e-14

SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L. Most SEP domains are succeeded closely by a UBX domain.


Pssm-ID: 462348  Cd Length: 75  Bit Score: 68.27  E-value: 1.63e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233121   155 VTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPRELGQVR----VQVKIISREEENYTE 212
Cdd:pfam08059   1 LTFWRNGFSVDDGPLRRYDDPANAEFLEAINRGEAPLELLNVApgqgVDVNLEDRRDEDYVP 62
SEP pfam08059
SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila ...
 273-300 1.61e-11

SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L. Most SEP domains are succeeded closely by a UBX domain.


Pssm-ID: 462348  Cd Length: 75  Bit Score: 59.79  E-value: 1.61e-11
                          10        20
                  ....*....|....*....|....*...
gi 15233121   273 VTIWRNGFTVDDDPFKSLDDPENAAFLE 300
Cdd:pfam08059   1 LTFWRNGFSVDDGPLRRYDDPANAEFLE 28
UBX pfam00789
UBX domain; This domain is present in ubiquitin-regulatory proteins and is a general ...
 358-435 1.52e-10

UBX domain; This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module.


Pssm-ID: 395637 [Multi-domain]  Cd Length: 80  Bit Score: 57.30  E-value: 1.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121   358 AAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMgSPPTPLS--DFDQTIEKAGIA-NSVLVQK 434
Cdd:pfam00789   1 AEDVTRLQIRLPDGSRLVRRFNSSDKLQTVYDFVDSNRYDDLEPFSLNTP-FPRRPLTdlDYSKTLKEAGLLpNSTLVLE 79


                  .
gi 15233121   435 F 435
Cdd:pfam00789  80 P 80
SEP smart00553
Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc) ...
 267-301 4.24e-10

Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47;


Pssm-ID: 197786  Cd Length: 93  Bit Score: 56.26  E-value: 4.24e-10
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 15233121    267 EVVTYTVTIWRNGFTVDDDPFKSLDDPENAAFLEY 301
Cdd:smart00553   1 QKVIHTLTFWSNGFSVDDGPLRTYDDPENAEFLES 35
UBX smart00166
Domain present in ubiquitin-regulatory proteins; Present in FAF1 and Shp1p.
 361-434 5.55e-03

Domain present in ubiquitin-regulatory proteins; Present in FAF1 and Shp1p.


Pssm-ID: 197552 [Multi-domain]  Cd Length: 77  Bit Score: 35.74  E-value: 5.55e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15233121    361 TTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQlLIMGSPPTPLSDFDQ---TIEKAGIANSVLVQK 434
Cdd:smart00166   1 VCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALGDGNDPFT-LNSPFPRRTFTKDDYskkLLELALLPSSTLVLE 76
 
Name Accession Description Interval E-value
UBX_UBXN2 cd01770
Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, ...
 363-434 2.23e-30

Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, NSFL1C/UBXN2C, and similar proteins; This family includes UBX domain-containing proteins UBXN2A, UBXN2B, and NSFL1C/UBXN2C, which contain a SEP (Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47) domain, and a ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold at the C-terminus. UBX domain participates broadly in the regulation of protein degradation. UBXN2A, UBXN2B, and UBXN2C function as the adaptor proteins of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation.


Pssm-ID: 340468  Cd Length: 71  Bit Score: 111.89  E-value: 2.23e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233121 363 SIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMgSPPTPLSDFDQTIEKAGIANSVLVQK 434
Cdd:cd01770   1 SIQIRLADGSRLVARFNLTHTVGDIRQFIDSARPGYSRPFVLMTG-FPPKELTDESQTLEEAGLLNAVVVQK 71
SEP smart00553
Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc) ...
 148-222 7.46e-25

Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47;


Pssm-ID: 197786  Cd Length: 93  Bit Score: 97.48  E-value: 7.46e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121    148 QKVFtHTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPRELGQV----RVQVKIISREEENYTE----------- 212
Cdd:smart00553   1 QKVI-HTLTFWSNGFSVDDGPLRTYDDPENAEFLESIRRGEAPLELLRVakgqPVNVDVEDHRDEDYVAppgafkpfsgs 79

                           90
                   ....*....|....
gi 15233121    213 ----SQAGSDSAST 222
Cdd:smart00553  80 gqklGSPGPQSLST 93
UBX_UBXN2B cd17161
Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2B (UBXN2B) and similar ...
 355-435 1.09e-15

Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2B (UBXN2B) and similar proteins; UBXN2B, also termed NSFL1 cofactor p37, or p97 cofactor p37, belongs to the UBXD family of proteins that contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. UBXN2B is an adaptor protein of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation. UBXN2B forms a tight complex with p97 in the cytosol and localizes to the Golgi and endoplasmic reticulum (ER).


Pssm-ID: 340681  Cd Length: 82  Bit Score: 71.85  E-value: 1.09e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121 355 VDPAAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMGSPPTPLSDFDQTIEKAGIANSVLVQK 434
Cdd:cd17161   1 IDDSVPTTKIQIRLADGSRLIQRFNQSHRIHDIRQFIVQSRPVFAASDFLLVTTFPNKELTDESQTLQEADILNTVILQR 80


                .
gi 15233121 435 F 435
Cdd:cd17161  81 L 81
UBX_UBXN2C cd17162
Ubiquitin regulatory domain X (UBX) found in NSFL1 cofactor (also known as UBX ...
 355-435 1.50e-15

Ubiquitin regulatory domain X (UBX) found in NSFL1 cofactor (also known as UBX domain-containing protein 2C (UBXN2C) and similar proteins; UBXN2C, also termed NSFL1C, or NSFL1 cofactor p47, or p97 cofactor p47, UBX1, or UBXD10, belongs to the UBXD family of proteins that contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. UBXN2C is a major adaptor of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation. The main role of the UBXN2C/p97 complex is in regulation of membrane fusion events. It plays an essential role in the reassembly of Golgi stacks at the end of mitosis. UBXN2C also functions as an essential factor for Golgi membrane fusion, which associates with the nuclear factor-kappaB essential modulator (NEMO) subunit of the IkappaB kinase (IKK) complex upon tumor necrosis factor (TNF)-alpha or interleukin (IL)-1 stimulation, induces the lysosome-dependent degradation of polyubiquitinated NEMO without p97, and thus inhibits IKK activation. Moreover, UBXN2C regulates a membrane fusion process, which is required by the maintenance of the endoplasmic reticulum (ER) network, through phosphorylation by Cdc2 kinase.


Pssm-ID: 340682  Cd Length: 82  Bit Score: 71.50  E-value: 1.50e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121 355 VDPAAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMGSPPTPLSDFDQTIEKAGIANSVLVQK 434
Cdd:cd17162   1 INDSEPVTNIQIRLADGGRLVQKFNHSHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 80


                .
gi 15233121 435 F 435
Cdd:cd17162  81 L 81
SEP pfam08059
SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila ...
 155-212 1.63e-14

SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L. Most SEP domains are succeeded closely by a UBX domain.


Pssm-ID: 462348  Cd Length: 75  Bit Score: 68.27  E-value: 1.63e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233121   155 VTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPRELGQVR----VQVKIISREEENYTE 212
Cdd:pfam08059   1 LTFWRNGFSVDDGPLRRYDDPANAEFLEAINRGEAPLELLNVApgqgVDVNLEDRRDEDYVP 62
SEP pfam08059
SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila ...
 273-300 1.61e-11

SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L. Most SEP domains are succeeded closely by a UBX domain.


Pssm-ID: 462348  Cd Length: 75  Bit Score: 59.79  E-value: 1.61e-11
                          10        20
                  ....*....|....*....|....*...
gi 15233121   273 VTIWRNGFTVDDDPFKSLDDPENAAFLE 300
Cdd:pfam08059   1 LTFWRNGFSVDDGPLRRYDDPANAEFLE 28
UBX pfam00789
UBX domain; This domain is present in ubiquitin-regulatory proteins and is a general ...
 358-435 1.52e-10

UBX domain; This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module.


Pssm-ID: 395637 [Multi-domain]  Cd Length: 80  Bit Score: 57.30  E-value: 1.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121   358 AAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMgSPPTPLS--DFDQTIEKAGIA-NSVLVQK 434
Cdd:pfam00789   1 AEDVTRLQIRLPDGSRLVRRFNSSDKLQTVYDFVDSNRYDDLEPFSLNTP-FPRRPLTdlDYSKTLKEAGLLpNSTLVLE 79


                  .
gi 15233121   435 F 435
Cdd:pfam00789  80 P 80
SEP smart00553
Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc) ...
 267-301 4.24e-10

Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47;


Pssm-ID: 197786  Cd Length: 93  Bit Score: 56.26  E-value: 4.24e-10
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 15233121    267 EVVTYTVTIWRNGFTVDDDPFKSLDDPENAAFLEY 301
Cdd:smart00553   1 QKVIHTLTFWSNGFSVDDGPLRTYDDPENAEFLES 35
UBX_UBXN2A cd17160
Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar ...
 355-434 2.91e-09

Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar proteins; UBXN2A, also termed UBX domain-containing protein 4 (UBXD4), belongs to the UBXD family of proteins that contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. UBXN2A functions as a p97 (also known as VCP or Cdc48) adaptor protein facilitating the regulation of the cell surface number and stability of alpha3-containing neuronal nicotinic acetylcholine receptors (nAChRs). It also regulates nicotinic receptor degradation by modulating the E3 ligase activity of carboxyl terminus of Hsc70 interacting protein (CHIP) that is involved in the degradation of several disease-related proteins. In addition, UBXN2A is an important anticancer factor that contributes to p53 localization and activation as a host defense mechanism against cancerous growth. It acts as a potential mortalin inhibitor, as well as a potential chemotherapy sensitizer for clinical application. It binds to the oncoprotein mortalin-2 (mot-2), and further unsequesters p53 from mot-2 in the cytoplasm, resulting in translocation of p53 to the nucleus where p53 proteins activate their downstream biological effects, including apoptosis.


Pssm-ID: 340680  Cd Length: 84  Bit Score: 53.71  E-value: 2.91e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233121 355 VDPAAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMGSPPTPLSDFDQTIEKAGIANSVLVQK 434
Cdd:cd17160   1 LNELEPITNIQIWLADGRRIVQKFNLSHRISHVRDFVEKIQGSSMSVPFTLATSLPFRELLDETLTLQEADLQNAVIVQR 80
UBX cd01767
Ubiquitin regulatory domain X (UBX) structurally similar to a beta-grasp ubiquitin-like fold; ...
 363-432 2.81e-07

Ubiquitin regulatory domain X (UBX) structurally similar to a beta-grasp ubiquitin-like fold; The UBXD family of proteins contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. Members in this family function as cofactors of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation. Based on domain composition, UBXD proteins can be divided into two main groups, with and without ubiquitin-associated (UBA) domain.


Pssm-ID: 340466 [Multi-domain]  Cd Length: 74  Bit Score: 47.64  E-value: 2.81e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233121 363 SIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMGsPPTPLS--DFDQTIEKAGIANSVLV 432
Cdd:cd01767   1 RIQIRLPDGSRIQRRFSKSDTLQDLYDFVESNLGDSPSSFSLVTSF-PRRVLTdeDSDKTLEELGLTPNAVL 71
UBX_UBXN10 cd17076
Ubiquitin regulatory domain X (UBX) found in UBX domain protein 10 (UBXN10) and similar ...
 368-431 7.85e-04

Ubiquitin regulatory domain X (UBX) found in UBX domain protein 10 (UBXN10) and similar proteins; UBXN10, also termed UBX domain-containing protein 3 (UBXD3), belongs to the UBXD family of proteins that contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. UBXN10 functions as a cofactor of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation. UBXN10 localizes to cilia in a p97-dependent manner, and both p97 and UBXN10 are required for ciliogenesis. Additionally, UBXN10 interacts with the intraflagellar transport B (IFT-B) and regulates anterograde transport into cilia.


Pssm-ID: 340596  Cd Length: 76  Bit Score: 37.99  E-value: 7.85e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15233121 368 LADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMGSPPTPLSDFDQTIEKAGIAN-SVL 431
Cdd:cd17076   9 LPDGQRFQRFFRPSDTLQDVLAFAESQSGLDLSNCIIETNEVPRRVFSDLSKTIAECGIQDkTVL 73
UBX smart00166
Domain present in ubiquitin-regulatory proteins; Present in FAF1 and Shp1p.
 361-434 5.55e-03

Domain present in ubiquitin-regulatory proteins; Present in FAF1 and Shp1p.


Pssm-ID: 197552 [Multi-domain]  Cd Length: 77  Bit Score: 35.74  E-value: 5.55e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15233121    361 TTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQlLIMGSPPTPLSDFDQ---TIEKAGIANSVLVQK 434
Cdd:smart00166   1 VCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALGDGNDPFT-LNSPFPRRTFTKDDYskkLLELALLPSSTLVLE 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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