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    Rho termination factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818753, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rho termination factor
    Primary source
    TAIR:AT2G41550
    Locus tag
    AT2G41550
    See related
    Araport:AT2G41550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T32G6.7; T32G6_7
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (17328886..17331173, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Heat shock protein DnaJ with tetratricopeptide repeat-containing protein Neighboring gene S-formylglutathione hydrolase Neighboring gene 6-phosphogluconate dehydrogenase family protein Neighboring gene autoinhibited Ca(2+)-ATPase Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129718.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription termination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rho termination factor
    NP_181686.2
    • Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 1046 Blast hits to 715 proteins in 227 species: Archae - 8; Bacteria - 305; Metazoa - 330; Fungi - 184; Plants - 18; Viruses - 2; Other Eukaryotes - 199 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17328886..17331173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129718.5 → NP_181686.2  Rho termination factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181686.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W120, A0A5S9X673, Q8GWL7
      Conserved Domains (1) summary
      smart00959
      Location:424 → 457
      Rho_N; Rho termination factor, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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