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Conserved domains on  [gi|30688700|ref|NP_181686|]
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Rho termination factor [Arabidopsis thaliana]

Protein Classification

Rho termination factor N-terminal domain-containing protein( domain architecture ID 10658919)

Rho termination factor N-terminal domain-containing protein which may bind nucleic acid; similar to Arabidopsis thaliana RHON1 which is involved in processing of plastid ribonucleic acids, and to rice OsBP-73 which interacts in vitro with the promoter of the nuclear waxy gene in rice; contains the N-terminal domain of transcription termination factor Rho

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rho_N smart00959
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ...
 424-457 1.23e-06

Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.


:

Pssm-ID: 198027 [Multi-domain]  Cd Length: 43  Bit Score: 45.06  E-value: 1.23e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30688700    424 ELKKKTGKELRSIAKDLKVQHYYKLKKEDLLQRI 457
Cdd:smart00959   1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAI 34
 
Name Accession Description Interval E-value
Rho_N smart00959
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ...
 424-457 1.23e-06

Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.


Pssm-ID: 198027 [Multi-domain]  Cd Length: 43  Bit Score: 45.06  E-value: 1.23e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30688700    424 ELKKKTGKELRSIAKDLKVQHYYKLKKEDLLQRI 457
Cdd:smart00959   1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAI 34
Rho_N pfam07498
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ...
 424-457 6.63e-06

Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).


Pssm-ID: 429493 [Multi-domain]  Cd Length: 43  Bit Score: 42.75  E-value: 6.63e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 30688700   424 ELKKKTGKELRSIAKDLKVQHYYKLKKEDLLQRI 457
Cdd:pfam07498   1 ELKEKTLSELREIAKELGIENYSRLRKQELIFAI 34
rho PRK09376
transcription termination factor Rho; Provisional
 424-457 8.19e-05

transcription termination factor Rho; Provisional


Pssm-ID: 236490 [Multi-domain]  Cd Length: 416  Bit Score: 44.75  E-value: 8.19e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 30688700  424 ELKKKTGKELRSIAKDLKVQHYYKLKKEDLLQRI 457
Cdd:PRK09376   5 ELKNKSLSELLELAEELGIENASRLRKQELIFAI 38
 
Name Accession Description Interval E-value
Rho_N smart00959
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ...
 424-457 1.23e-06

Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.


Pssm-ID: 198027 [Multi-domain]  Cd Length: 43  Bit Score: 45.06  E-value: 1.23e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30688700    424 ELKKKTGKELRSIAKDLKVQHYYKLKKEDLLQRI 457
Cdd:smart00959   1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAI 34
Rho_N pfam07498
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ...
 424-457 6.63e-06

Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).


Pssm-ID: 429493 [Multi-domain]  Cd Length: 43  Bit Score: 42.75  E-value: 6.63e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 30688700   424 ELKKKTGKELRSIAKDLKVQHYYKLKKEDLLQRI 457
Cdd:pfam07498   1 ELKEKTLSELREIAKELGIENYSRLRKQELIFAI 34
rho PRK09376
transcription termination factor Rho; Provisional
 424-457 8.19e-05

transcription termination factor Rho; Provisional


Pssm-ID: 236490 [Multi-domain]  Cd Length: 416  Bit Score: 44.75  E-value: 8.19e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 30688700  424 ELKKKTGKELRSIAKDLKVQHYYKLKKEDLLQRI 457
Cdd:PRK09376   5 ELKNKSLSELLELAEELGIENASRLRKQELIFAI 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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