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    CAP-gly domain linker [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818515, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CAP-gly domain linker
    Primary source
    TAIR:AT2G39300
    Locus tag
    AT2G39300
    See related
    Araport:AT2G39300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16B24.6; T16B24_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (16409539..16413874, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene phosphatidylglycerolphosphate synthase 1 Neighboring gene jacalin-related lectin 22 Neighboring gene Cysteine proteinases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001202782.2
    NM_001336764.1
    NM_129487.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    CAP-gly domain linker
    NP_001189711.1
    • unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55060.1).
    NP_181462.4
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55060.1); Has 46416 Blast hits to 28308 proteins in 1743 species: Archae - 734; Bacteria - 4822; Metazoa - 24446; Fungi - 3539; Plants - 2267; Viruses - 163; Other Eukaryotes - 10445 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16409539..16413874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336763.1 → NP_001324687.1  CAP-gly domain linker [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQT0, A0A1P8B0U3

    2. NM_129487.6 → NP_181462.4  CAP-gly domain linker [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181462.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQT0, A0A654F075, F4IUY1
      Conserved Domains (1) summary
      pfam15921
      Location:203 → 801
      CCDC158; Coiled-coil domain-containing protein 158

    3. NM_001202782.2 → NP_001189711.1  CAP-gly domain linker [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189711.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQT0, A0A654F075, F4IUY1
      Conserved Domains (1) summary
      pfam15921
      Location:203 → 801
      CCDC158; Coiled-coil domain-containing protein 158

    4. NM_001336764.1 → NP_001324688.1  CAP-gly domain linker [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQT0, A0A654F075, F4IUY1
      Conserved Domains (1) summary
      pfam15921
      Location:203 → 801
      CCDC158; Coiled-coil domain-containing protein 158
    Nucleotide Protein
    Heading Accession and Version

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