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    F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817144, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like/FBD-like domains-containing protein
    Primary source
    TAIR:AT2G26030
    Locus tag
    AT2G26030
    See related
    Araport:AT2G26030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19L18.16; T19L18_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (11091330..11093444, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene plant defensin 1.3 Neighboring gene plant defensin 1.2b Neighboring gene PYR1-like 2 Neighboring gene hypothetical protein (DUF1644)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036343.1
    NM_001336034.1
    NM_001336035.1
    NM_128162.3
    NM_201806.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like/FBD-like domains-containing protein
    NP_001031420.1
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_180173.1
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44950.1); Has 2057 Blast hits to 2017 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2053; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973535.1
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11091330..11093444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201806.3 → NP_973535.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973535.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X1D1, A0A654EXT8, F4ITL1
      Conserved Domains (3) summary
      smart00579
      Location:295 → 368
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:58 → 79
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:79 → 105
      LRR_2; Leucine Rich Repeat

    2. NM_128162.3 → NP_180173.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180173.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80993, Q3EBT9, Q8H1M0
      UniProtKB/TrEMBL
      A0A654EXT8
      Conserved Domains (4) summary
      smart00579
      Location:368 → 441
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:131 → 152
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:4 → 51
      F-box; F-box domain
      pfam07723
      Location:152 → 178
      LRR_2; Leucine Rich Repeat

    3. NM_001336034.1 → NP_001323594.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXL6, A0A654EXT8

    4. NM_001036343.1 → NP_001031420.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031420.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80993, Q3EBT9, Q8H1M0
      UniProtKB/TrEMBL
      A0A654EXT8
      Conserved Domains (4) summary
      smart00579
      Location:368 → 441
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:131 → 152
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:4 → 51
      F-box; F-box domain
      pfam07723
      Location:152 → 178
      LRR_2; Leucine Rich Repeat

    5. NM_001336035.1 → NP_001323595.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXJ3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1M0.2

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