NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|79323090|ref|NP_001031420|]
View 

F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

Protein Classification

F-box/FBD/LRR-repeat protein( domain architecture ID 17779682)

F-box/FBD/LRR-repeat protein may be a component of an SCF (Skp1-Cullin-F-box protein) ubiquitin-protein ligase that is involved in ubiquitin-dependent degradation

CATH:  1.20.1280.50|3.80.10.10
Gene Ontology:  GO:0006511|GO:0019005|GO:0005515|GO:0016567
PubMed:  31898225|11178263|11751054|14747988|10581972|7583641
SCOP:  4001927|4003523

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
368-441 2.97e-18

domain in FBox and BRCT domain containing plant proteins;


:

Pssm-ID: 214730  Cd Length: 72  Bit Score: 78.73  E-value: 2.97e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79323090    368 QCLLSSLECVEIRELiMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIaNQDSDIFKELSTFTKRSRSCEVIII 441
Cdd:smart00579   1 ECLLSSLEVLEIKGY-RGTEEEKELVKYFLENAPCLKKLTISVETSDD-EEKLEILKELLSLPRASSSCQVQFL 72
F-box_AtFBL13-like cd22160
F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) ...
 6-40 1.23e-12

F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) and similar proteins; AtARP13 and AtARP25 belong to the largest subfamily of plant F-box proteins, F-box/LRR-repeat protein (FBLs). It contains tandem leucine-rich repeats (LRRs). Like other F-box proteins, they may be components of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 438931  Cd Length: 36  Bit Score: 61.92  E-value: 1.23e-12
                        10        20        30
                ....*....|....*....|....*....|....*
gi 79323090   6 ICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLW 40
Cdd:cd22160   1 ISDLPDELLCHILSFLPTKDAVKTSVLSKRWRHLW 35
LRR_2 pfam07723
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the ...
 152-178 2.38e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model.


:

Pssm-ID: 336782  Cd Length: 26  Bit Score: 40.83  E-value: 2.38e-05
                          10        20
                  ....*....|....*....|....*..
gi 79323090   152 SLKIMHLEDVWYYDDpLIMEKIISGCP 178
Cdd:pfam07723   1 SLKTLHLDSVVFSDE-DSLEKLLSGCP 26
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
368-441 2.97e-18

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 78.73  E-value: 2.97e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79323090    368 QCLLSSLECVEIRELiMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIaNQDSDIFKELSTFTKRSRSCEVIII 441
Cdd:smart00579   1 ECLLSSLEVLEIKGY-RGTEEEKELVKYFLENAPCLKKLTISVETSDD-EEKLEILKELLSLPRASSSCQVQFL 72
FBD pfam08387
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ...
 364-408 6.63e-13

FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors.


Pssm-ID: 462458  Cd Length: 45  Bit Score: 62.73  E-value: 6.63e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 79323090   364 TYVPQCLLSSLECVEIRElIMGEETGEKLVRYFLKNSVVLKKLIL 408
Cdd:pfam08387   2 SSVPECLLSSLETVEWRG-YRGEEEEKEFAKYILENARVLKKATI 45
F-box_AtFBL13-like cd22160
F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) ...
 6-40 1.23e-12

F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) and similar proteins; AtARP13 and AtARP25 belong to the largest subfamily of plant F-box proteins, F-box/LRR-repeat protein (FBLs). It contains tandem leucine-rich repeats (LRRs). Like other F-box proteins, they may be components of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438931  Cd Length: 36  Bit Score: 61.92  E-value: 1.23e-12
                        10        20        30
                ....*....|....*....|....*....|....*
gi 79323090   6 ICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLW 40
Cdd:cd22160   1 ISDLPDELLCHILSFLPTKDAVKTSVLSKRWRHLW 35
LRR_2 pfam07723
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the ...
 152-178 2.38e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model.


Pssm-ID: 336782  Cd Length: 26  Bit Score: 40.83  E-value: 2.38e-05
                          10        20
                  ....*....|....*....|....*..
gi 79323090   152 SLKIMHLEDVWYYDDpLIMEKIISGCP 178
Cdd:pfam07723   1 SLKTLHLDSVVFSDE-DSLEKLLSGCP 26
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 6-46 5.83e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 37.52  E-value: 5.83e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 79323090     6 ICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVL 46
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLW 41
FBOX smart00256
A Receptor for Ubiquitination Targets;
9-40 6.62e-03

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 34.33  E-value: 6.62e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 79323090      9 LPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLW 40
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLI 32
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
368-441 2.97e-18

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 78.73  E-value: 2.97e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79323090    368 QCLLSSLECVEIRELiMGEETGEKLVRYFLKNSVVLKKLILRLEDSSIaNQDSDIFKELSTFTKRSRSCEVIII 441
Cdd:smart00579   1 ECLLSSLEVLEIKGY-RGTEEEKELVKYFLENAPCLKKLTISVETSDD-EEKLEILKELLSLPRASSSCQVQFL 72
FBD pfam08387
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ...
 364-408 6.63e-13

FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors.


Pssm-ID: 462458  Cd Length: 45  Bit Score: 62.73  E-value: 6.63e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 79323090   364 TYVPQCLLSSLECVEIRElIMGEETGEKLVRYFLKNSVVLKKLIL 408
Cdd:pfam08387   2 SSVPECLLSSLETVEWRG-YRGEEEEKEFAKYILENARVLKKATI 45
F-box_AtFBL13-like cd22160
F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) ...
 6-40 1.23e-12

F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) and similar proteins; AtARP13 and AtARP25 belong to the largest subfamily of plant F-box proteins, F-box/LRR-repeat protein (FBLs). It contains tandem leucine-rich repeats (LRRs). Like other F-box proteins, they may be components of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438931  Cd Length: 36  Bit Score: 61.92  E-value: 1.23e-12
                        10        20        30
                ....*....|....*....|....*....|....*
gi 79323090   6 ICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLW 40
Cdd:cd22160   1 ISDLPDELLCHILSFLPTKDAVKTSVLSKRWRHLW 35
LRR_2 pfam07723
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the ...
 152-178 2.38e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model.


Pssm-ID: 336782  Cd Length: 26  Bit Score: 40.83  E-value: 2.38e-05
                          10        20
                  ....*....|....*....|....*..
gi 79323090   152 SLKIMHLEDVWYYDDpLIMEKIISGCP 178
Cdd:pfam07723   1 SLKTLHLDSVVFSDE-DSLEKLLSGCP 26
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 6-46 5.83e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 37.52  E-value: 5.83e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 79323090     6 ICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVL 46
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLW 41
FBOX smart00256
A Receptor for Ubiquitination Targets;
9-40 6.62e-03

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 34.33  E-value: 6.62e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 79323090      9 LPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLW 40
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLI 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH