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    LOC123208782 uncharacterized LOC123208782 [ Mangifera indica (mango) ]

    Gene ID: 123208782, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123208782
    Gene description
    uncharacterized LOC123208782
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mangifera indica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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    Genomic context

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    See LOC123208782 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current CATAS_Mindica_2.1 (GCF_011075055.1) 2 NC_058138.1 (472994..489723, complement)

    Chromosome 2 - NC_058138.1Genomic Context describing neighboring genes Neighboring gene protein PYRICULARIA ORYZAE RESISTANCE 21-like Neighboring gene uncharacterized LOC123208795 Neighboring gene uncharacterized LOC123208796 Neighboring gene uncharacterized LOC123208793

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058138.1 Chromosome 2 Reference CATAS_Mindica_2.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC123208782

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CATAS_Mindica_2.1

    Genomic

    1. NC_058138.1 Reference CATAS_Mindica_2.1

      Range
      472994..489723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044626322.1 → XP_044482257.1  uncharacterized protein LOC123208782 isoform X5

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1799 → 1846
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_044626321.1 → XP_044482256.1  uncharacterized protein LOC123208782 isoform X4

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:612 → 806
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1808 → 1855
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:614 → 636
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1360 → 1383
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_044626324.1 → XP_044482259.1  uncharacterized protein LOC123208782 isoform X6

      Conserved Domains (5) summary
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1766 → 1813
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1342 → 1368
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    4. XM_044626319.1 → XP_044482254.1  uncharacterized protein LOC123208782 isoform X3

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    5. XM_044626320.1 → XP_044482255.1  uncharacterized protein LOC123208782 isoform X3

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    6. XM_044626318.1 → XP_044482253.1  uncharacterized protein LOC123208782 isoform X3

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    7. XM_044626317.1 → XP_044482252.1  uncharacterized protein LOC123208782 isoform X3

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    8. XM_044626310.1 → XP_044482245.1  uncharacterized protein LOC123208782 isoform X1

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    9. XM_044626316.1 → XP_044482251.1  uncharacterized protein LOC123208782 isoform X1

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    10. XM_044626315.1 → XP_044482250.1  uncharacterized protein LOC123208782 isoform X1

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    11. XM_044626313.1 → XP_044482248.1  uncharacterized protein LOC123208782 isoform X1

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    12. XM_044626314.1 → XP_044482249.1  uncharacterized protein LOC123208782 isoform X1

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    13. XM_044626309.1 → XP_044482244.1  uncharacterized protein LOC123208782 isoform X1

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    14. XM_044626312.1 → XP_044482247.1  uncharacterized protein LOC123208782 isoform X1

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    15. XM_044626311.1 → XP_044482246.1  uncharacterized protein LOC123208782 isoform X2

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1812 → 1859
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1364 → 1387
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    16. XM_044626325.1 → XP_044482260.1  uncharacterized protein LOC123208782 isoform X7

      Conserved Domains (6) summary
      COG1390
      Location:41 → 130
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      COG4886
      Location:616 → 810
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd02335
      Location:1665 → 1712
      ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
      sd00033
      Location:618 → 640
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1217 → 1240
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38936
      Location:227 → 327
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
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