U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    tfec transcription factor EC [ Alosa sapidissima (American shad) ]

    Gene ID: 121697740, updated on 12-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    tfec
    Gene description
    transcription factor EC
    See related
    EnsemblRapid:ENSASDG00000033039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alosa sapidissima
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tfec in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fAloSap1.pri (GCF_018492685.1) 22 NC_055978.1 (19461985..19525187)

    Chromosome 22 - NC_055978.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121697182 Neighboring gene uncharacterized LOC121697178 Neighboring gene uncharacterized LOC121697181 Neighboring gene tubulin tyrosine ligase-like family, member 12 Neighboring gene MyoD family inhibitor domain containing Neighboring gene forkhead box P2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_055978.1 Chromosome 22 Reference fAloSap1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor EC

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Alosa sapidissima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAloSap1.pri Primary Assembly

    Genomic

    1. NC_055978.1 Reference fAloSap1.pri Primary Assembly

      Range
      19461985..19525187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042079392.1 → XP_041935326.1  transcription factor EC isoform X3

      Conserved Domains (1) summary
      cd18925
      Location:232 → 316
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    2. XM_042079390.1 → XP_041935324.1  transcription factor EC isoform X1

      Conserved Domains (1) summary
      cd18925
      Location:266 → 350
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    3. XM_042079393.1 → XP_041935327.1  transcription factor EC isoform X4

      Conserved Domains (1) summary
      cd18925
      Location:207 → 291
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    4. XM_042079391.1 → XP_041935325.1  transcription factor EC isoform X2

      Conserved Domains (1) summary
      cd18925
      Location:241 → 325
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    5. XM_042079395.1 → XP_041935329.1  transcription factor EC isoform X6

      Related
      ENSASDP00000009037.1, ENSASDT00000036019.1
      Conserved Domains (1) summary
      cd18925
      Location:181 → 265
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    6. XM_042079396.1 → XP_041935330.1  transcription factor EC isoform X7

      Related
      ENSASDP00000046890.1, ENSASDT00000036021.1
      Conserved Domains (1) summary
      cd18925
      Location:180 → 264
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    7. XM_042079394.1 → XP_041935328.1  transcription factor EC isoform X5

      Conserved Domains (1) summary
      cd18925
      Location:182 → 266
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    8. XM_042079397.1 → XP_041935331.1  transcription factor EC isoform X8

      Related
      ENSASDP00000046891.1, ENSASDT00000036022.1
      Conserved Domains (1) summary
      cd18925
      Location:157 → 241
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.