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    LOC106157152 MLX-interacting protein [ Lingula anatina ]

    Gene ID: 106157152, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106157152
    Gene description
    MLX-interacting protein
    See related
    EnsemblRapid:LOC106157152
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106157152 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775567.1 (227931..254090)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013581149.1 (63289..88973, complement)

    NW_019775567.1Genomic Context describing neighboring genes Neighboring gene dynein heavy chain 5, axonemal Neighboring gene uncharacterized LOC106157150 Neighboring gene allene oxide synthase-lipoxygenase protein Neighboring gene popeye domain-containing protein 3 Neighboring gene uncharacterized LOC106157154

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MLX-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775567.1 Reference LinAna2.0 Primary Assembly

      Range
      227931..254090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013532667.2 → XP_013388121.1  MLX-interacting protein isoform X3

      UniProtKB/TrEMBL
      A0A1S3HQ10
      Related
      XP_013388121.1, XM_013532667.2
      Conserved Domains (1) summary
      cd00083
      Location:760 → 822
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    2. XM_013532666.2 → XP_013388120.1  MLX-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A1S3HQ10
      Related
      XP_013388120.1, XM_013532666.2
      Conserved Domains (1) summary
      cd00083
      Location:760 → 822
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    3. XM_013532665.2 → XP_013388119.1  MLX-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A1S3HQ10
      Related
      XP_013388119.1, XM_013532665.2
      Conserved Domains (1) summary
      cd00083
      Location:760 → 822
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    4. XM_013532670.2 → XP_013388124.1  MLX-interacting protein isoform X4

      UniProtKB/TrEMBL
      A0A1S3HSU1
      Related
      XP_013388124.1, XM_013532670.2
      Conserved Domains (1) summary
      cd00083
      Location:760 → 821
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    5. XM_013532671.2 → XP_013388125.1  MLX-interacting protein isoform X5

      UniProtKB/TrEMBL
      A0A1S3HQ15
      Related
      XP_013388125.1, XM_013532671.2
      Conserved Domains (1) summary
      cd00083
      Location:756 → 818
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    6. XM_013532673.2 → XP_013388127.1  MLX-interacting protein isoform X7

      UniProtKB/TrEMBL
      A0A1S3HRE7
      Related
      XP_013388127.1, XM_013532673.2
      Conserved Domains (1) summary
      cd00083
      Location:607 → 669
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    7. XM_013532672.2 → XP_013388126.1  MLX-interacting protein isoform X6

      UniProtKB/TrEMBL
      A0A1S3HRE7
      Related
      XP_013388126.1, XM_013532672.2
      Conserved Domains (1) summary
      cd00083
      Location:607 → 669
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    Nucleotide Protein
    Heading Accession and Version

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