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    LOC100822025 translocon-associated protein subunit beta [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100822025, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100822025
    Gene description
    translocon-associated protein subunit beta
    Locus tag
    BRADI_2g03687v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100822025 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (2649974..2652370)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (2649963..2652370)

    Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene probable inactive shikimate kinase like 1, chloroplastic Neighboring gene uncharacterized LOC112270908 Neighboring gene chaperone protein dnaJ 20, chloroplastic Neighboring gene serine/arginine-rich splicing factor 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocon-associated protein subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      2649974..2652370
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010232175.3 → XP_010230477.1  translocon-associated protein subunit beta

      UniProtKB/TrEMBL
      I1HC65, I1HC67
      Conserved Domains (1) summary
      pfam05753
      Location:18 → 190
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    Nucleotide Protein Strain
    Heading Accession and Version

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