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    LOC100246937 tubby-like F-box protein 8 [ Vitis vinifera (wine grape) ]

    Gene ID: 100246937, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC100246937
    Gene description
    tubby-like F-box protein 8
    Locus tag
    VIT_00034528001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100246937 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (24217500..24223493, complement)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (19867314..19873294, complement)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109121621 Neighboring gene uncharacterized LOC104882691 Neighboring gene small nucleolar RNA snoR118 Neighboring gene uncharacterized LOC104882677 Neighboring gene auxin-induced protein 5NG4-like Neighboring gene trihelix transcription factor DF1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubby-like F-box protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      24217500..24223493 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010666827.3 → XP_010665129.1  tubby-like F-box protein 8 isoform X1

      See identical proteins and their annotated locations for XP_010665129.1

      UniProtKB/TrEMBL
      A5AJR7
      Conserved Domains (2) summary
      pfam01167
      Location:116 → 420
      Tub; Tub family
      pfam12937
      Location:53 → 95
      F-box-like

    2. XM_010666825.3 → XP_010665127.1  tubby-like F-box protein 8 isoform X1

      See identical proteins and their annotated locations for XP_010665127.1

      UniProtKB/TrEMBL
      A5AJR7
      Conserved Domains (2) summary
      pfam01167
      Location:116 → 420
      Tub; Tub family
      pfam12937
      Location:53 → 95
      F-box-like

    3. XM_002267878.4 → XP_002267914.1  tubby-like F-box protein 8 isoform X1

      See identical proteins and their annotated locations for XP_002267914.1

      UniProtKB/TrEMBL
      A5AJR7
      Conserved Domains (2) summary
      pfam01167
      Location:116 → 420
      Tub; Tub family
      pfam12937
      Location:53 → 95
      F-box-like

    4. XM_059735056.1 → XP_059591039.1  tubby-like F-box protein 8 isoform X2

      UniProtKB/TrEMBL
      A5AJR7, F6GY33

    5. XM_059735059.1 → XP_059591042.1  tubby-like F-box protein 8 isoform X2

      UniProtKB/TrEMBL
      A5AJR7, F6GY33

    6. XM_019216713.2 → XP_019072258.1  tubby-like F-box protein 8 isoform X1

      UniProtKB/TrEMBL
      A5AJR7
      Conserved Domains (2) summary
      pfam01167
      Location:116 → 420
      Tub; Tub family
      pfam12937
      Location:53 → 95
      F-box-like

    7. XM_019216712.2 → XP_019072257.1  tubby-like F-box protein 8 isoform X1

      UniProtKB/TrEMBL
      A5AJR7
      Conserved Domains (2) summary
      pfam01167
      Location:116 → 420
      Tub; Tub family
      pfam12937
      Location:53 → 95
      F-box-like

    8. XM_010666826.3 → XP_010665128.1  tubby-like F-box protein 8 isoform X1

      See identical proteins and their annotated locations for XP_010665128.1

      UniProtKB/TrEMBL
      A5AJR7
      Conserved Domains (2) summary
      pfam01167
      Location:116 → 420
      Tub; Tub family
      pfam12937
      Location:53 → 95
      F-box-like

    9. XM_059735057.1 → XP_059591040.1  tubby-like F-box protein 8 isoform X2

      UniProtKB/TrEMBL
      A5AJR7, F6GY33

    10. XM_059735055.1 → XP_059591038.1  tubby-like F-box protein 8 isoform X1

      UniProtKB/TrEMBL
      A5AJR7

    11. XM_059735058.1 → XP_059591041.1  tubby-like F-box protein 8 isoform X2

      UniProtKB/TrEMBL
      A5AJR7, F6GY33
    Nucleotide Protein
    Heading Accession and Version

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