tubby-like F-box protein 8 isoform X1 [Vitis vinifera]
Protein Classification
tubby-like F-box protein( domain architecture ID 17778958)
tubby-like F-box protein may participate in the abscisic acid (ABA) signaling pathway in plants
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||
| Tub | pfam01167 | Tub family; |
115-420 | 7.41e-151 | |||||
Tub family; : Pssm-ID: 460094 Cd Length: 251 Bit Score: 427.76 E-value: 7.41e-151
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| F-box_AtTLP-like | cd22153 | F-box domain found in Arabidopsis thaliana TUBBY-like proteins (AtTLPs) and similar proteins; ... |
53-97 | 8.25e-27 | |||||
F-box domain found in Arabidopsis thaliana TUBBY-like proteins (AtTLPs) and similar proteins; The TUBBY-like protein gene family of Arabidopsis has 11 members, AtTLP1-11. They have conserved C-terminal tubby domains. All AtTLP members except AtTLP8 also contain a conserved F-box domain. AtTLPs are involved in responses to stress. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. : Pssm-ID: 438924 Cd Length: 45 Bit Score: 101.35 E-value: 8.25e-27
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| Name | Accession | Description | Interval | E-value | |||||
| Tub | pfam01167 | Tub family; |
115-420 | 7.41e-151 | |||||
Tub family; Pssm-ID: 460094 Cd Length: 251 Bit Score: 427.76 E-value: 7.41e-151
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| F-box_AtTLP-like | cd22153 | F-box domain found in Arabidopsis thaliana TUBBY-like proteins (AtTLPs) and similar proteins; ... |
53-97 | 8.25e-27 | |||||
F-box domain found in Arabidopsis thaliana TUBBY-like proteins (AtTLPs) and similar proteins; The TUBBY-like protein gene family of Arabidopsis has 11 members, AtTLP1-11. They have conserved C-terminal tubby domains. All AtTLP members except AtTLP8 also contain a conserved F-box domain. AtTLPs are involved in responses to stress. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438924 Cd Length: 45 Bit Score: 101.35 E-value: 8.25e-27
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| F-box-like | pfam12937 | F-box-like; This is an F-box-like family. |
53-95 | 5.37e-05 | |||||
F-box-like; This is an F-box-like family. Pssm-ID: 463757 [Multi-domain] Cd Length: 45 Bit Score: 40.16 E-value: 5.37e-05
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| Name | Accession | Description | Interval | E-value | |||||
| Tub | pfam01167 | Tub family; |
115-420 | 7.41e-151 | |||||
Tub family; Pssm-ID: 460094 Cd Length: 251 Bit Score: 427.76 E-value: 7.41e-151
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| F-box_AtTLP-like | cd22153 | F-box domain found in Arabidopsis thaliana TUBBY-like proteins (AtTLPs) and similar proteins; ... |
53-97 | 8.25e-27 | |||||
F-box domain found in Arabidopsis thaliana TUBBY-like proteins (AtTLPs) and similar proteins; The TUBBY-like protein gene family of Arabidopsis has 11 members, AtTLP1-11. They have conserved C-terminal tubby domains. All AtTLP members except AtTLP8 also contain a conserved F-box domain. AtTLPs are involved in responses to stress. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438924 Cd Length: 45 Bit Score: 101.35 E-value: 8.25e-27
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| F-box-like | pfam12937 | F-box-like; This is an F-box-like family. |
53-95 | 5.37e-05 | |||||
F-box-like; This is an F-box-like family. Pssm-ID: 463757 [Multi-domain] Cd Length: 45 Bit Score: 40.16 E-value: 5.37e-05
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| F-box_AtSKIP19-like | cd22164 | F-box domain found in Arabidopsis thaliana SKP1-interacting partner 19 (AtSKIP19) and similar ... |
53-97 | 3.89e-04 | |||||
F-box domain found in Arabidopsis thaliana SKP1-interacting partner 19 (AtSKIP19) and similar proteins; AtSKIP19, also called F-box protein SKIP19, or F-box/LRR-repeat protein 20 (FBL20), is a component of SCF (SPK1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It interacts with CUL1 and SPK1B/ASK2. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438935 [Multi-domain] Cd Length: 47 Bit Score: 37.96 E-value: 3.89e-04
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| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
53-104 | 4.88e-04 | |||||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 37.52 E-value: 4.88e-04
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| F-box_SF | cd09917 | F-box domain superfamily; This short domain is commonly found at the N-terminus of various ... |
56-96 | 7.27e-04 | |||||
F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures. Pssm-ID: 438852 Cd Length: 35 Bit Score: 36.65 E-value: 7.27e-04
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| Blast search parameters | ||||
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