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Method Detail
Submitter Method Handle: SSAHASNP
Submitter Method ID: WGSA-200403
Submitted method description:
We aligned the Celera WGSA human assembly, accessioned as AADD00000000, to build34 of the human genome, available at ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/, using ssahaSNP. The settings for ssahaSNP were such that 9 of the 10 neighboring bases from t
he candidate SNP base match (these 10 bases are from the 5 bases on either side of the candidate SNP).

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id
SSAHASNP Assay WGSA-200403-chr1 121
SSAHASNP Assay WGSA-200403-chr10 121
SSAHASNP Assay WGSA-200403-chr11 121
SSAHASNP Assay WGSA-200403-chr12 121
SSAHASNP Assay WGSA-200403-chrX 121
SSAHASNP Assay WGSA-200403-chr13 121
SSAHASNP Assay WGSA-200403-chr14 121
SSAHASNP Assay WGSA-200403-chr15 121
SSAHASNP Assay WGSA-200403-chr16 121
SSAHASNP Assay WGSA-200403-chr17 121
SSAHASNP Assay WGSA-200403-chr18 121
SSAHASNP Assay WGSA-200403-chr19 121
SSAHASNP Assay WGSA-200403-chr2 121
SSAHASNP Assay WGSA-200403-chr20 121
SSAHASNP Assay WGSA-200403-chr21 121
SSAHASNP Assay WGSA-200403-chr22 121
SSAHASNP Assay WGSA-200403-chr3 121
SSAHASNP Assay WGSA-200403-chr4 121
SSAHASNP Assay WGSA-200403-chr5 121
SSAHASNP Assay WGSA-200403-chr6 121
SSAHASNP Assay WGSA-200403-chr7 121
SSAHASNP Assay WGSA-200403-chr8 121
SSAHASNP Assay WGSA-200403-chr9 121
SSAHASNP Assay WGSA-200403-chrUn 121
SSAHASNP Assay WGSA-200403-chrY 121

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