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View SNP Submission Batch
Submitter Handle:TISHKOFF
Submitter Batch ID:Lachance2012Cell_deletion
Submitter Method ID:COMPLETE GENOMICS
Citation:Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers
Comment:10 Pygmy, 10 Hadza, and 10 Sandawe chromosomes were sequenced to detect varation
Batch Total SubSNP(ss) Count:600081


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss553708520 del_chr1_567242-567242 -/G 30 rs60652689 0 1 631862 NT_032977.10 45874
ss553708521 del_chr1_568830-568838 -/CCCCCTCTA 30 rs368738507 0 1 633450 NT_032977.10 47462
ss553708522 del_chr1_752513-752513 -/A 30 rs372296167 0 1 817133 NT_032977.10 231145
ss553708523 del_chr1_769139-769140 -/AT 30 rs59306077 0 1 833759 NT_032977.10 247771
ss553708524 del_chr1_774551-774554 -/GAGA 30 rs201117564 0 1 839171 NT_032977.10 253183
ss553708525 del_chr1_779317-779318 -/GA 30 rs80302052 0 1 843931 NT_032977.10 257943
ss553708526 del_chr1_781058-781058 -/C 30 rs60652745 0 1 845678 NT_032977.10 259690
ss553708527 del_chr1_781148-781148 -/T 30 rs368896347 0 1 845768 NT_032977.10 259780
ss553708528 del_chr1_790754-790755 -/AT 30 rs74609473 0 1 855374 NT_032977.10 269386
ss553708529 del_chr1_790760-790761 -/AT 30 rs3039191 0 1 855380 NT_032977.10 269392
ss553708530 del_chr1_790806-790807 -/TG 30 rs369928203 0 1 855426 NT_032977.10 269438
ss553708531 del_chr1_790914-790917 -/TTGT 30 rs374049764 0 1 855534 NT_032977.10 269546
ss553708532 del_chr1_795178-795179 -/CT 30 rs376735637 0 1 859798 NT_032977.10 273810
ss553708533 del_chr1_795387-795390 -/CTAA 30 rs371046062 0 1 860007 NT_032977.10 274019
ss553708534 del_chr1_801784-801786 -/TCT 30 rs375189097 0 1 866404 NT_032977.10 280416
ss553708535 del_chr1_810902-810904 -/TCT 30 rs377576874 0 1 875522 NT_032977.10 289534
ss553708536 del_chr1_834639-834639 -/C 30 rs34941678 1 1 899258 NT_032977.10 313270
ss553708537 del_chr1_835809-835811 -/AGG 30 rs373706630 0 1 900429 NT_032977.10 314441
ss553708538 del_chr1_836619-836619 -/A 30 rs368720388 0 1 901239 NT_032977.10 315251
ss553708539 del_chr1_837557-837560 -/TGTG 30 rs372275095 0 1 902177 NT_032977.10 316189
ss553708540 del_chr1_846602-846602 -/T 30 rs35331099 1 1 911221 NT_032977.10 325233
ss553708541 del_chr1_848657-848657 -/G 30 rs5772026 1 1 913275 NT_032977.10 327287
ss553708542 del_chr1_848833-848833 -/A 30 rs3841265 1 1 913449 NT_032977.10 327461
ss553708543 del_chr1_855639-855641 -/CTT 30 rs77712898 0 1 920256 NT_032977.10 334268
ss553708544 del_chr1_856518-856518 -/C 30 rs747835611 0 1 921138 NT_032977.10 335150
ss553708545 del_chr1_858692-858692 -/G 30 rs34628185 1 1 923312 NT_032977.10 337324
ss553708546 del_chr1_867998-868001 -/TTTC 30 rs5772025 1 1 932614 NT_032977.10 346626
ss553708547 del_chr1_872783-872784 -/CC 30 rs5772023 1 1 937397 NT_032977.10 351409
ss553708548 del_chr1_872786-872787 -/CC 30 rs5772023 1 1 937397 NT_032977.10 351409
ss553708549 del_chr1_872787-872787 -/C 30 rs376808032 0 1 937407 NT_032977.10 351419
30 of 600081 subsnp's starting at ss553708520. ss# starting at ss

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