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Submitted SNP(ss) Details: ss81580942           
Submitter
HandleHGSV
Submitter SNP IDCor19129_DIV_20070510.chr15_55562975-55562976_2
RefSNP(rs#)rs60667956
Submitted Batch IDNA19129-Fosmids-20070510-DIPs
Submitted DateNov 30, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA19129-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleTT/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize100372955 190-193 36 forward 2

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss81580942|allelePos=501|len=1001|taxid=9606|alleles='TT/-'|mol=Genomic
 CACATTGCCC AGGCTGATCT TGAACTCCTG ACCTCAGGTG GTCCGCCCAC CGCGGCCTCC
 TAAAGTGCTG GGATTATAGG AGTGAGCCAC TGCGCCTGGC CTACCTTTTC ATATAAATGT
 TAGAATTACC TTGTCTGTAT CTATACAAAT TTTGCTGAAG TTTTGATAGG TTGAGTATGA
 CTATGTTGAG TATTCCAGTC CATGAACATG GTCTAAGTAA ATCTCCATTT ATTTAGATGT
 TCACTGCTTT CATCATTTGA TTTTGTATTT TCAAGCATAC AAGTCCTGTA TGTGTTGTGC
 TAAACTTATA CCTAAGGGTT TAATGTTTTT GAGTGATTAT AAATGGTATA TTTTTACATT
 TTAGTATCCT TCTGTTCATT GCTAGTATAC AGAAATGCAG TTGTATGTTT TTATTTATGT
 TTATTTTATA TCAGGACCTT TATTTCTTTA CCTTGCTGAA ATCACATATT CTACAAAGTT
 TTCTTTTTTT TTTTTTTTTT
 N
 GTGACAGGGA GGTGGTAGAT TCCTTGGGAT TTTTTATATA GACAATCATG TCATCTGCAA
 ACAGGGACAG TTTTATTTCT TGCTTTCTGA TGCTTTCTGA TCTATATACC TTTTGCTACT
 TATTTCCTGC CTTATTACGC AGGCTAGAAG CTCCAATACT ATGTTGAATC AGAGTGGTGG
 GAGCAGGTAT CCCAGCCTTA GTCTCAGTCT TAGGGGGAGG TATTCAGTTT CTTACTATTA
 AATATAATGT TAATTATAGA TCTTTTGTGA ATTGGATGCT CTTTAGTTGA GAATGTTCCT
 CTCTATTCAT AATTTGTTTG GAGCTTAAAG AAAGTTTAAA TCATGAATGG ATTTTGAGTT
 TTGTTAAATG CTTTCTCTGC ATTTATTGAT ATGATCATGT GATTTTTCCC TCCTGATTTT
 AAACTATCAA ACCAGCCTAG CATTCCTGGA ATAAACTTCA CTTGATCCTA CTGTATAATT
 CTTTTAAAAA TTGCTGACTT

  Submitted Frequency for ss81580942 back to top
There is no frequency submission for ss81580942.


  dbSNP summary of Genotypes for ss81580942 back to top
No sufficient data to compute Hardy-weinberg probability for ss81580942.


  Submitted individual genotype for ss81580942 back to top
There is no individual genotype data for ss81580942.

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